View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_12 (Length: 444)
Name: NF17962_low_12
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 429
Target Start/End: Complemental strand, 29769002 - 29768580
Alignment:
| Q |
7 |
ctgatatgaaacattatcattatggttgaataatgttgtaggccagcatattggactgtctgaacccacgttaccatatttgagtcctcaattgaccgga |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769002 |
ctgacatgaaacattatcattatggttgaataatgttgtaggccagcatattggactgtctgaacccacgttaccatatttgagtcctcaattgaccgga |
29768903 |
T |
|
| Q |
107 |
caaagactatcggttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaaattcgttaatttactacgtactat |
206 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29768902 |
caaagactattggttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaaattcgttaatttactacgtactat |
29768803 |
T |
|
| Q |
207 |
gcttcaattctttcactataagtacactaatctaaccaactactagtaggcatattttaagggattaacatgaaatgttaaattctaaacaaatttggtg |
306 |
Q |
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| T |
29768802 |
gtttcaattctttcactataagtacactaatctaaccaactactagtaggcatattttaagggattaacatgaaatgttaaattctaaacaaatttggtg |
29768703 |
T |
|
| Q |
307 |
atatattaaggatattaaagtcatatattcactagaatattctcnnnnnnntaaatattaattaggattacaattatatgcaggtgggaatattaagaat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29768702 |
atatattaaggatattaaagtcatatattcactagaatattctcaaaaaaataaatattaattaggattacaattatatgcaggtgggaatattaagaat |
29768603 |
T |
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| Q |
407 |
gtttcaacaattttcgttgtttg |
429 |
Q |
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||||||||||||||||||||||| |
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| T |
29768602 |
gtttcaacaattttcgttgtttg |
29768580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 35372296 - 35372233
Alignment:
| Q |
119 |
gttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa |
182 |
Q |
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||||| |||||||||||||| || || |||||||||||||||| || || ||||||||||||| |
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| T |
35372296 |
gttggtgccaattttgcttctgcgggcgttggaattcttaatgatacaggaattcaatttgtaa |
35372233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 7387571 - 7387505
Alignment:
| Q |
119 |
gttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaaatt |
185 |
Q |
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| T |
7387571 |
gttggagctaattttgcttcagctggaattggaatactcaatgacactgggattcaatttgtaaatt |
7387505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 1808054 - 1808116
Alignment:
| Q |
120 |
ttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa |
182 |
Q |
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|||| |||||||||| ||||||||| |||||||| |||||||| ||||| |||||||||||| |
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| T |
1808054 |
ttggtgccaattttggttcagctggaattggaatccttaatgataccggagttcaatttgtaa |
1808116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 48074723 - 48074786
Alignment:
| Q |
119 |
gttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa |
182 |
Q |
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| T |
48074723 |
gttggtgccaatttcgcttctgctggaattggaattctcaatgatactggaattcaatttgtaa |
48074786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 48091813 - 48091876
Alignment:
| Q |
119 |
gttggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa |
182 |
Q |
| |
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||||| |||||||||||||| ||||| ||||||||||| ||||| ||||| || || ||||||| |
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| T |
48091813 |
gttggtgccaattttgcttccgctggcattggaattctcaatgataccggaatccagtttgtaa |
48091876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 48101539 - 48101600
Alignment:
| Q |
121 |
tggagccaattttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa |
182 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||| || || || || |||||||||||| |
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| T |
48101539 |
tggagccaattttgcttcagctggaattggcattctcaacgatactggagttcaatttgtaa |
48101600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 6342831 - 6342780
Alignment:
| Q |
131 |
tttgcttcagctgggattggaattcttaatgacaccggcattcaatttgtaa |
182 |
Q |
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|||||||| ||||||||||||||||| |||||||| || |||||||||||| |
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| T |
6342831 |
tttgcttctgctgggattggaattctcaatgacactggagttcaatttgtaa |
6342780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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