View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_14 (Length: 434)

Name: NF17962_low_14
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_14
NF17962_low_14
[»] chr6 (6 HSPs)
chr6 (18-424)||(6934538-6934946)
chr6 (22-99)||(6947460-6947537)
chr6 (311-372)||(6947188-6947245)
chr6 (165-254)||(6953944-6954040)
chr6 (188-254)||(6947370-6947436)
chr6 (178-214)||(6952924-6952960)
[»] chr7 (2 HSPs)
chr7 (29-140)||(1985539-1985654)
chr7 (80-203)||(18514123-18514246)
[»] chr2 (1 HSPs)
chr2 (80-221)||(14515463-14515604)
[»] chr8 (2 HSPs)
chr8 (117-222)||(37413909-37414014)
chr8 (93-146)||(29506600-29506653)
[»] chr3 (1 HSPs)
chr3 (93-154)||(14979869-14979930)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 6934946 - 6934538
Alignment:
Q  18 agtttatggtgtacaatatattgtgtgattattttcaaatcatggttttatttgataatcagtttgccctcaagtttatttgttttgtcttgcgtttaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6934946 agtttatggtgtacaatatattgtgtgattattttcaaatcatggttttatttgataatcagttttccctcaagtttatttgttttgtcttgcgtttaaa 6934847  T
Q  118 tattggtaacaatgaactttgattattagctatgaatttctttgattttatttactattataattttgagcttttatgtgaatggtacaatggtataaat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  6934846 tattggtaacaatgaactttgattattagctatgaatttctttgattttatttactattatagttttgagcttttatgtgtatggtacaatggtataaat 6934747  T
Q  218 ttctaagctcatgccaaaattaatagttcagtagtatagcagccattgcaaattgcaatataactgaacatattcaatttctatacacatcaaagataat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6934746 ttctaagctcatgccaaaattaatagttcagtagtatagcagcctttgcaaattgcaatatacctgaacatattcaatttctatacacatcaaagataat 6934647  T
Q  318 aagaagataaagaaatttggattgaaataattaagcctacatcaaagaaagctaatgaagaccggtg--gtttgagacatatgacttaagagaattgttg 415  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  6934646 aagaagataaagaaatttggattgaaatagttaagcctacatcaaagaaagctaatgaagaccagtggtgtttgagacatatgacttaagagaattgttg 6934547  T
Q  416 gatcctttg 424  Q
    |||||||||    
T  6934546 gatcctttg 6934538  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 6947537 - 6947460
Alignment:
Q  22 tatggtgtacaatatattgtgtgattattttcaaatcatggttttatttgataatcagtttgccctcaagtttatttg 99  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6947537 tatgatgtacaatatattgtgtgattattttcaaatcatggttttatttgataatcattttgccctcaagtttatttg 6947460  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 6947245 - 6947188
Alignment:
Q  311 agataataagaagataaagaaatttggattgaaataattaagcctacatcaaagaaagctaa 372  Q
    |||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||    
T  6947245 agataataagaagatatagaaatttggattgaaa----taagcctacatcaaagaaagctaa 6947188  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 6954040 - 6953944
Alignment:
Q  165 ttatttactattataattttgagcttttatgtgaatggtacaatggtat-------aaatttctaagctcatgccaaaattaatagttcagtagtat 254  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||||       |  ||||||||||||| ||| ||||||||||||| ||||||    
T  6954040 ttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtat 6953944  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 6947436 - 6947370
Alignment:
Q  188 cttttatgtgaatggtacaatggtataaatttctaagctcatgccaaaattaatagttcagtagtat 254  Q
    |||| ||||| ||||||||||||||||| |||||||||| |||| | ||||| ||||||| ||||||    
T  6947436 ctttgatgtgtatggtacaatggtataagtttctaagctgatgctataattagtagttcaatagtat 6947370  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 6952960 - 6952924
Alignment:
Q  178 taattttgagcttttatgtgaatggtacaatggtata 214  Q
    |||||||||||||||||||| |||||| |||||||||    
T  6952960 taattttgagcttttatgtgtatggtagaatggtata 6952924  T

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Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 1985654 - 1985539
Alignment:
Q  29 tacaatatattgtgtgattattttcaaatcatggttttatttgataatcagtttgccctcaagt----ttatttgttttgtcttgcgtttaaatattggt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    ||||||||||||| ||| |||||||||||||     
T  1985654 tacaatatattgtgtgattattttcaaatcatggttttatttgataatcattttgccctcaagtttaattatttgttttgtattgagtttaaatattggc 1985555  T
Q  125 aacaatgaactttgat 140  Q
    ||||||| ||||||||    
T  1985554 aacaatgcactttgat 1985539  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 18514246 - 18514123
Alignment:
Q  80 tttgccctcaagtttatttgttttgtcttgcgtttaaatattggtaacaatgaactttgattattagctatgaatttctttgattttatttactattata 179  Q
    |||||||| || |||||||| ||||| ||  ||||||||| | |||||||||||||||||||||||||||||||| ||||  |||||||    | || ||    
T  18514246 tttgccctgaaatttatttgctttgtattaggtttaaatacttgtaacaatgaactttgattattagctatgaatgtcttcaattttatgccatgttcta 18514147  T
Q  180 attttgagcttttatgtgaatggt 203  Q
     ||||||||||||||||| |||||    
T  18514146 tttttgagcttttatgtgtatggt 18514123  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 14515463 - 14515604
Alignment:
Q  80 tttgccctcaagtttatttgttttgtcttgcgtttaaatattggtaacaatgaactttgattattagctatgaatttctttgattttatttactattata 179  Q
    |||||||| || |||||||| || || ||  ||||||||| |||||||||||||||| | |||||||||||||||  |||  ||||||| | || || ||    
T  14515463 tttgccctgaaatttatttgcttagtattaggtttaaatactggtaacaatgaacttcggttattagctatgaatgccttcaattttatgtcctgttcta 14515562  T
Q  180 attttgagcttttatgtgaatggtacaatggtataaatttct 221  Q
     |||||||||||| | || ||||| |  ||||||||||||||    
T  14515563 tttttgagcttttgtatgtatggtgctttggtataaatttct 14515604  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 37414014 - 37413909
Alignment:
Q  117 atattggtaacaatgaactttgattattagctatgaatttctttgattttatttactattataattttgagcttttatgtgaatggtacaatggtataaa 216  Q
    ||||||||||| |||||||||||||||||| |||||||  |||| ||||| | || |||| || ||||| ||||||||||| ||| ||  |||| ||| |    
T  37414014 atattggtaacgatgaactttgattattagttatgaatagctttaattttgtgtattattttagttttgtgcttttatgtgtatgatagcatggcataca 37413915  T
Q  217 tttcta 222  Q
    ||||||    
T  37413914 tttcta 37413909  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 29506653 - 29506600
Alignment:
Q  93 ttatttgttttgtcttgcgtttaaatattggtaacaatgaactttgattattag 146  Q
    ||||||| ||| | ||| |||| |||||| ||||||||||||||||||||||||    
T  29506653 ttatttgctttatgttgggtttgaatattagtaacaatgaactttgattattag 29506600  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 14979869 - 14979930
Alignment:
Q  93 ttatttgttttgtcttgcgtttaaatattggtaacaatgaactttgattattagctatgaat 154  Q
    ||||||| ||| | ||| ||||||||| ||||| || ||||||||||||||||| |||||||    
T  14979869 ttatttgctttatattgggtttaaataatggtagcagtgaactttgattattagttatgaat 14979930  T

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