View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17962_low_18 (Length: 346)
Name: NF17962_low_18
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 45549786 - 45549450
Alignment:
| Q |
1 |
ttcatggacagcaagaaaataaagcctgaaaagattgaacaaatgttgagtagaagaaatgaacaagaagctagtggtagagcatctggaaaattgaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45549786 |
ttcatggacagcaagaaaataaagcctgaaaagattgaacaaatgttgagtagaagaaatgaacaagaagctagtggtagagcatctggaaaattgaatg |
45549687 |
T |
|
| Q |
101 |
tcttaaatggagcagaccaaaaaaggtttagcatattcacagaacatgaactgcttcctacttctacgttgtacaatgctggcaagagtgaagatttaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45549686 |
tcttaaatggagcagaccaaaaaaggtttagcatattcacagaacatgaactgcttcctacttctacgttgtacaattctggcaagagtgaagatttaca |
45549587 |
T |
|
| Q |
201 |
agaatcggccaatgatttggtaagcactgactgagtaggatctaaaaccgccaatttatgtcatatgaacataaattacataatataaatctaacagtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45549586 |
agaatcggccaatgatttggtaagcactgactgagtaggatctaaaaccgccaatttatgtcatatgaacataaattacataatataaatctaacagtta |
45549487 |
T |
|
| Q |
301 |
catgatatgtctttcacgaactaaaatatataaccct |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45549486 |
catgatatgtctttcacgaactaaaatatataaccct |
45549450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University