View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_19 (Length: 345)
Name: NF17962_low_19
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 54269762 - 54269424
Alignment:
| Q |
1 |
ggtatctgttcagcttgagagacagaaaatatccaactgggcttagaacaaacagagcaacaagtgctggttactggaaagcaactgggaaggacaagga |
100 |
Q |
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| T |
54269762 |
ggtatctgttcagcttgagagacagaaaatatccaactgggcttagaacaaacagagcaacaagtgctggttactggaaagcaactgggaaggacaagga |
54269663 |
T |
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| Q |
101 |
agtttacagctgcagtagtagatcccttttggggatgaagaagacccttgttttctacaaaggaagggcccctcgtggtgaaaagaccaaatgggtcatg |
200 |
Q |
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| T |
54269662 |
agtttacagctgtagtagtagatcccttttggggatgaagaagacccttgttttctacaaaggaagggcccctcgtggtgaaaagaccaaatgggtcatg |
54269563 |
T |
|
| Q |
201 |
catgagtaccgtttacactctcatcactgttctccgttgaatacctgcaaggtaacactagactctgtctgtcacatacacgtgcatgcaccgtgctcaa |
300 |
Q |
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|||||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54269562 |
catgagtaccgtttacactctcatcacttttctccttcgaatacctgtaaggtaacactagactctgtctgtcacatacacgtgcatgcaccgtgctcaa |
54269463 |
T |
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| Q |
301 |
caagttatctctatcctcttcaattttgtatattattgg |
339 |
Q |
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| T |
54269462 |
caagttatctctatcctcttcaattttgtctatttttgg |
54269424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 31347961 - 31347900
Alignment:
| Q |
150 |
gttttctacaaaggaagggcccctcgtggtgaaaagaccaaatgggtcatgcatgagtaccg |
211 |
Q |
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| T |
31347961 |
gttttctacataggaagagctccgagtggtgaaaaaaccaattgggtcatgcatgaataccg |
31347900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 31358609 - 31358548
Alignment:
| Q |
150 |
gttttctacaaaggaagggcccctcgtggtgaaaagaccaaatgggtcatgcatgagtaccg |
211 |
Q |
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| T |
31358609 |
gttttctacataggaagagctccgagtggtgaaaaaaccaattgggtcatgcatgaataccg |
31358548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 45058890 - 45058965
Alignment:
| Q |
16 |
tgagagacagaaaatatccaactgggcttagaacaaacagagcaacaagtgctggttactggaaagcaactgggaa |
91 |
Q |
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| T |
45058890 |
tgagagacagaaaatatccaactgggttgaggacaaacagagcaacagaagcaggttattggaaagcaactgggaa |
45058965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 8450200 - 8450241
Alignment:
| Q |
132 |
gggatgaagaagacccttgttttctacaaaggaagggcccct |
173 |
Q |
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| T |
8450200 |
gggatgaggaagacccttgttttctacaaaggaagagcccct |
8450241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 3893379 - 3893449
Alignment:
| Q |
135 |
atgaagaagacccttgttttctacaaaggaagggcccctcgtggtgaaaagaccaaatgggtcatgcatga |
205 |
Q |
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| T |
3893379 |
atgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatga |
3893449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 39016488 - 39016424
Alignment:
| Q |
27 |
aaatatccaactgggcttagaacaaacagagcaacaagtgctggttactggaaagcaactgggaa |
91 |
Q |
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|||||| ||||||| ||||||||||||||||||| | |||| || ||||||||||||||||| |
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| T |
39016488 |
aaatatgcaactggatttagaacaaacagagcaactatatctgggtattggaaagcaactgggaa |
39016424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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