View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_2 (Length: 644)
Name: NF17962_low_2
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Complemental strand, 11151097 - 11150473
Alignment:
| Q |
18 |
catactttctccatctctgtaaaatcatccatgctcaaaactcaatcaacaaaataatgaaattttcttgtat------aaaagaatccaaacatcaaaa |
111 |
Q |
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| T |
11151097 |
catactttctccatctctgtaaaatcattcatgctcaaaactcaatcaacaaaataatgaaattttcttgtatttgtataaaagaatccaaacatcaaaa |
11150998 |
T |
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| Q |
112 |
tttttgtagaaaactattagtattaattaatacctttggatctgtgcatggagtatagtcttgataatcattgctgcattcagggaaactaaagggctta |
211 |
Q |
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| T |
11150997 |
tttttgtagaaaactattagtattaattaatacctttggatctgtgcatggagtatagtcttgataatcattgctgcattcagggaaactaaagggctta |
11150898 |
T |
|
| Q |
212 |
atttgcaaagagcctgaggattgcttaggtgaatcaagtgatttctgaatggtgttgatgacatcaacaccattgtttccagatttaaagactccaccaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11150897 |
atttgcaaagagcctgaggattgcttaggtgaatcaagtgatttctgaatggtgttgatgacatcaacaccattgtttccagatttaaagactccaccaa |
11150798 |
T |
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| Q |
312 |
ggtagaatgaaaaaccacacagaacaatgatagtgatcgccgcagtcagagatcggttcttgttcggctggtggatcagttttccatccttatgcttcat |
411 |
Q |
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| T |
11150797 |
ggtagaatgaaaaaccacacagaacaatgatagtgatcgccgcagtcagagatcggttcttgttcggctggtggatcagttttccatccttatgcttcat |
11150698 |
T |
|
| Q |
412 |
gatcctagacttttattccacttactatctgcacaaaaggaaccactagacttcagtataattcaactatactaatgccacttcctccacaaacatatca |
511 |
Q |
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| T |
11150697 |
gatcctagacttttattccacttactatctgcacaaaaggaacaactaaacttcagtataattcaactatactaatgccacttcctccacaaacatatca |
11150598 |
T |
|
| Q |
512 |
tgaatcatagtaatcactaatgaaaaaatcactctaacaaacatatctagagttatggtctctttcaactttgagaaacaacttgatctgaatgaacact |
611 |
Q |
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| T |
11150597 |
tgaatcatagtaatcactaatgaaaaaatcactctaacaaac--atctagagttatggtctctttcaactttgagaaacaacttgatctgaatgaacact |
11150500 |
T |
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| Q |
612 |
acggttttataaagagatctgtgctgc |
638 |
Q |
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| T |
11150499 |
aaggtttcataaagagatctgtgctgc |
11150473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 30259303 - 30259383
Alignment:
| Q |
142 |
tacctttggatctgtgcatggagtatagtcttgataatcattgctgcattcagggaaactaaagggcttaatttgcaaaga |
222 |
Q |
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|||| ||||||| ||||||||||| || |||||||| ||| ||||||||||| ||||| | || |||||||||||||| |
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| T |
30259303 |
tacccttggatcagtgcatggagtgtaatcttgatagtcaacactgcattcaggaaaactgatggatttaatttgcaaaga |
30259383 |
T |
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