View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_21 (Length: 337)
Name: NF17962_low_21
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 642852 - 642569
Alignment:
| Q |
7 |
aagaatatataaacatggggaagaattagcactcaatccaaaagggaaccaaatcaaaatggaaaaatgagaaacagaatctttatggtcaaagtagtca |
106 |
Q |
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| T |
642852 |
aagaacatataaacatggggaagaattagcactcaatccaaaagggaaccaaatcaaaatggaaaaatgagaaacagaatctttatggtcaaagtagtca |
642753 |
T |
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| Q |
107 |
aacatgaacacctaattttaagaaacacaatccaacatatatatcgtatttgaaggaat---------aacaagtaaagagagaaattgaaaaatagaaa |
197 |
Q |
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| T |
642752 |
aacatgaacacctaatattaagaaacacaatccaac----atatcgtatttgaaggaataacaataacaacaagtaaagagagaaattgaaaaatagaaa |
642657 |
T |
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| Q |
198 |
cacaagttttcatgttgcatagttttgtgctcnnnnnnncacaataaaaagaaaagattaacaatcatctcctccatggtatggtatag |
286 |
Q |
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| T |
642656 |
cacaagttttcatgttgcatagttttgtgctc-ttttttcacaataaaaacaaaagattcccaatcatctcctccatggtatggtatag |
642569 |
T |
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