View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17962_low_22 (Length: 335)
Name: NF17962_low_22
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 679789 - 680094
Alignment:
| Q |
16 |
gtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679789 |
gtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgct |
679888 |
T |
|
| Q |
116 |
tagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttggtaatttgatgggaaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
679889 |
tagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttggtaatttgatgggaaacc |
679988 |
T |
|
| Q |
216 |
taccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgtcgtttgggtcttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679989 |
taccgagaatctcagggaggacatcgaagagaagagtgggaagtggtggcggagatgttatggttccagccgtatggacgatgatgtcgtttgggtcttc |
680088 |
T |
|
| Q |
316 |
ctcccc |
321 |
Q |
| |
|
|||||| |
|
|
| T |
680089 |
ctcccc |
680094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 747707 - 748015
Alignment:
| Q |
16 |
gtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgct |
115 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
747707 |
gtaacaacgatagaagtagataaaaccgaggggattggagaaacatactcaactaactcagccaagttgttccaagaggttatcatgaggtggtggcgct |
747806 |
T |
|
| Q |
116 |
tagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatggg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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|
| T |
747807 |
tagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatggg |
747906 |
T |
|
| Q |
211 |
aaacctaccgagaatctcagggaggacatcgaagagaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgtcgtttggg |
310 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
747907 |
aagcctaccgagaaactcagggaaaacatcgaatggaagagtgggaagtggcggcggagatgttatggttccagccgtatggacgatgatgtcgtttgga |
748006 |
T |
|
| Q |
311 |
tcttcctcc |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
748007 |
tcttcctcc |
748015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 9595208 - 9595361
Alignment:
| Q |
16 |
gtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgct |
115 |
Q |
| |
|
||||||| ||||||||| || |||| ||| |||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||| |||||||| |
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|
| T |
9595208 |
gtaacaatggtagaagtagaaaaaactgagtggattggagaatcatatagaactaaatcagccaagttgttcatagaggctatcatgaggtggtggcgct |
9595307 |
T |
|
| Q |
116 |
tagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaat |
169 |
Q |
| |
|
| ||||| ||||||||||| |||||||| ||| ||||||||| ||||||||||| |
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|
| T |
9595308 |
ttgttgacaattgaaggtgattctttgcaaattttggatcagaaataagagaat |
9595361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 259
Target Start/End: Complemental strand, 2474573 - 2474346
Alignment:
| Q |
37 |
aaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgct |
136 |
Q |
| |
|
|||| |||||| ||||| |||||||||| ||| ||||| | |||| ||| | ||| |||| |||||||| ||||||||| |||||||||||||||| | |
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|
| T |
2474573 |
aaaagcgagggtattggggaatcatactgaacgtactcacctaagtagttgctagatgttaccatgaggtggtggcgcttgtttgataattgaaggtgtt |
2474474 |
T |
|
| Q |
137 |
tctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagtt-----ggtaatttgatgggaaacctaccgagaatctcagg |
231 |
Q |
| |
|
||||||||||| | |||| | ||| | ||||| |||||||||||| ||||| | |||||||||| ||||| ||||| |||||||||||| |
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|
| T |
2474473 |
tctttgcgaatctgggattggaaattaaagaattaaagaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcagg |
2474374 |
T |
|
| Q |
232 |
gaggacatcgaagagaagagtgggaagt |
259 |
Q |
| |
|
|||| ||| ||| |||||||||||||| |
|
|
| T |
2474373 |
caggagatcaaagggaagagtgggaagt |
2474346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 2491564 - 2491317
Alignment:
| Q |
16 |
gtaacaacggtagaagttgataaaatcgaggggattggagaatcatactcaactaactcagccaagttgttccaagaggttatcatgaggttgtggcgct |
115 |
Q |
| |
|
|||| |||||||||||| || |||| |||||| ||||| ||||||| | ||| |||||| |||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
2491564 |
gtaataacggtagaagtagaaaaaagcgagggtattggggaatcatgatgaaccaactcacccaagttgttttttgaggttaccatgaggtggtggcgct |
2491465 |
T |
|
| Q |
116 |
tagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg-----gtaatttgatggg |
210 |
Q |
| |
|
| ||||| |||||||| ||||| ||||||||| | ||||||| ||| | ||||| |||||| ||||||||||| || ||||||| | || |
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|
| T |
2491464 |
ttgttgacaattgaagatgcttttttgcgaatttaggatcagaaattaaagaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcaccgg |
2491365 |
T |
|
| Q |
211 |
aaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
258 |
Q |
| |
|
|| ||||| ||||||||||| |||||||| || ||||||| ||||| |
|
|
| T |
2491364 |
aagcctacacagaatctcaggcaggacatcaaaaggaagagttggaag |
2491317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 755292 - 755445
Alignment:
| Q |
94 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
193 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| |||||||||||| || | |
|
|
| T |
755292 |
gttaacatgaggtggtggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaagacttacagaggcaccgca |
755391 |
T |
|
| Q |
194 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcga |
242 |
Q |
| |
|
| || ||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
755392 |
gctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcga |
755445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 258
Target Start/End: Complemental strand, 2476051 - 2475887
Alignment:
| Q |
99 |
catgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg- |
197 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| ||||||||||| |||||| ||||| ||||| || |
|
|
| T |
2476051 |
catgaggtggtggcgctttgttgacaattgaaggtgtttctttgcgaatttaggatcagaaataagagaattgaaaaacttacaaaggcaccgaagctgt |
2475952 |
T |
|
| Q |
198 |
----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
258 |
Q |
| |
|
||||||||| || |||||| ||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
2475951 |
acgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaag |
2475887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 7334931 - 7335100
Alignment:
| Q |
94 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
193 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||| ||||||| |
|
|
| T |
7334931 |
gttaccatgaggtggtggcgctttgttgacaattgaaggtgcttctttgcgaattttggatcagagataacagaattaaagaacttacagagacatcgaa |
7335030 |
T |
|
| Q |
194 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
258 |
Q |
| |
|
| || ||||||| | |||| ||||| ||||||||||| |||||||| || ||||||| ||||| |
|
|
| T |
7335031 |
gctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag |
7335100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 9562612 - 9562672
Alignment:
| Q |
83 |
tgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgc |
143 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9562612 |
tgttccaagaggttaccaagaggtggtggcgcttagttgacaattgaaggtgcttctttgc |
9562672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 9566482 - 9566651
Alignment:
| Q |
94 |
gttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaa |
193 |
Q |
| |
|
|||| |||||||| |||||||| ||||| |||||||| || || ||||||||| ||||||||| ||||||||||| ||| |||||||| |||| |
|
|
| T |
9566482 |
gttaacatgaggtgatggcgctttgttgacaattgaagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaa |
9566581 |
T |
|
| Q |
194 |
gttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
258 |
Q |
| |
|
| || ||||||| ||||||| ||||| ||||||||||| | |||||||||| ||||||| ||||| |
|
|
| T |
9566582 |
gctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaag |
9566651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 258
Target Start/End: Original strand, 7443641 - 7443823
Alignment:
| Q |
81 |
gttgttccaagaggttatcatgaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnnctta |
180 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| |||| | ||| ||||||| ||||||||| ||||| | ||||||| ||| | ||||| |||| |
|
|
| T |
7443641 |
gttgttcctagaggttaccatgaggcggtgatgcttggctgaaaattgaaagtgcttcttggcgaaattgggatcagaaattaaagaattgaagaactta |
7443740 |
T |
|
| Q |
181 |
cagaggcatcgaagttg-----gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
258 |
Q |
| |
|
|||||||| |||||||| ||||||| | |||| ||| | ||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7443741 |
cagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaag |
7443823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 7325065 - 7325226
Alignment:
| Q |
102 |
gaggttgtggcgcttagttgataattgaaggtgcttctttgcgaatgttggatcagcaataagagaatnnnnnnncttacagaggcatcgaagttg---- |
197 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||||||||| || ||||||| ||| | ||||| |||||||||||| ||||| || |
|
|
| T |
7325065 |
gaggtggtggcgcttagttgataattgaagatgtttctttgcgaaagtgggatcagaaattaaagaattgaagaacttacagaggcaccgaagctgtatg |
7325164 |
T |
|
| Q |
198 |
-gtaatttgatgggaaacctaccgagaatctcagggaggacatcgaagagaagagtgggaag |
258 |
Q |
| |
|
||||||| | |||| ||| | |||||||||||| | ||||||||| ||||||| ||||| |
|
|
| T |
7325165 |
agtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaag |
7325226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 2634905 - 2634861
Alignment:
| Q |
236 |
acatcgaagagaagagtgggaagtggcggcggagatgttatggtt |
280 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2634905 |
acatcgaacggaagagtcggaagtggcggcggagatgttatggtt |
2634861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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