View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_23 (Length: 332)

Name: NF17962_low_23
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_23
NF17962_low_23
[»] chr2 (3 HSPs)
chr2 (50-316)||(14667657-14667932)
chr2 (59-96)||(11487458-11487495)
chr2 (59-96)||(32102872-32102909)
[»] chr4 (3 HSPs)
chr4 (59-98)||(31277034-31277073)
chr4 (59-96)||(2796556-2796593)
chr4 (49-93)||(32369927-32369971)
[»] chr8 (3 HSPs)
chr8 (59-97)||(41226745-41226783)
chr8 (59-98)||(43806206-43806245)
chr8 (59-96)||(31551847-31551884)
[»] chr6 (3 HSPs)
chr6 (49-98)||(34625734-34625783)
chr6 (47-93)||(18263361-18263407)
chr6 (48-98)||(34598537-34598587)
[»] chr7 (2 HSPs)
chr7 (210-242)||(23278362-23278394)
chr7 (59-95)||(40826525-40826561)
[»] chr1 (1 HSPs)
chr1 (59-102)||(48317607-48317650)
[»] chr5 (1 HSPs)
chr5 (59-96)||(28322251-28322288)
[»] chr3 (3 HSPs)
chr3 (59-96)||(47542545-47542582)
chr3 (59-96)||(49636838-49636875)
chr3 (59-95)||(27858350-27858386)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 50 - 316
Target Start/End: Original strand, 14667657 - 14667932
Alignment:
Q  50 acacctattataatttgagaaaatgaactaattgaatataatcacatatattaatatc--------acacacctcagaagccgaacaggctctcatcaca 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||| |||||||| ||||||||||||    
T  14667657 acacctattataatttgagaaaatgaactaattgaatataatcacatatgttaatatccgacactgacacacctcagacgccgaacacgctctcatcaca 14667756  T
Q  142 tagatatttgtacaccttctgtgcatagtgatttaannnnnnnnnnnnnnnnnnn-acaggttcttacaaatggaaaatacaagagtgtggagcatagag 240  Q
    |||||||||||||||||||||||||||||| |||||                    ||||||||||||||||||||||||||||||||||||||||||||    
T  14667757 tagatatttgtacaccttctgtgcatagtggtttaatttttcatttttttcattttacaggttcttacaaatggaaaatacaagagtgtggagcatagag 14667856  T
Q  241 ctgtggctcatgaggaaaaagacaggctctcaattgtgacattttatgctcctagctatgaagtagagcttggacc 316  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  14667857 ctgtggctcatgaggaaaaagacagactctcaattgtgacattttatgctcctagctatgatctagagctaggacc 14667932  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 11487458 - 11487495
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacat 96  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  11487458 ataaattgagaaaatgaagtaattgaatataatcacat 11487495  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 32102909 - 32102872
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacat 96  Q
    ||||||||||||||| || |||||||||||||||||||    
T  32102909 ataatttgagaaaataaattaattgaatataatcacat 32102872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 31277073 - 31277034
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacatat 98  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  31277073 ataatttgagaaaatgaactaattgaatgtaatcacatat 31277034  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 2796556 - 2796593
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacat 96  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  2796556 ataatttgagaaaatgaattaattgaatttaatcacat 2796593  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 32369971 - 32369927
Alignment:
Q  49 gacacctattataatttgagaaaatgaactaattgaatataatca 93  Q
    |||||| || |||||||||||||||||| ||||||||| ||||||    
T  32369971 gacaccgataataatttgagaaaatgaattaattgaatgtaatca 32369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 41226783 - 41226745
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacata 97  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  41226783 ataatttgagaaaatgaactatttgaatataatcacata 41226745  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 43806245 - 43806206
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacatat 98  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  43806245 ataatttaagaaaatgaattaattgaatataatcacatat 43806206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 31551884 - 31551847
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacat 96  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  31551884 ataatttgagaaaatgaataaattgaatataatcacat 31551847  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 34625734 - 34625783
Alignment:
Q  49 gacacctattataatttgagaaaatgaactaattgaatataatcacatat 98  Q
    |||||| || |||||||||||||||||| ||||||||| |||||||||||    
T  34625734 gacaccgataataatttgagaaaatgaattaattgaatgtaatcacatat 34625783  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 18263407 - 18263361
Alignment:
Q  47 ttgacacctattataatttgagaaaatgaactaattgaatataatca 93  Q
    |||||||  ||||||||||||||||||||| |||||||| |||||||    
T  18263407 ttgacactaattataatttgagaaaatgaattaattgaacataatca 18263361  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 34598537 - 34598587
Alignment:
Q  48 tgacacctattataatttgagaaaatgaactaattgaatataatcacatat 98  Q
    ||||||| || |||||||||||||||||| |||||| || |||||||||||    
T  34598537 tgacaccgataataatttgagaaaatgaattaattggatgtaatcacatat 34598587  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 23278362 - 23278394
Alignment:
Q  210 aatggaaaatacaagagtgtggagcatagagct 242  Q
    |||||||||||||||||||||||||||||||||    
T  23278362 aatggaaaatacaagagtgtggagcatagagct 23278394  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 40826525 - 40826561
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcaca 95  Q
    |||||||||||||||||| ||||||||||||||||||    
T  40826525 ataatttgagaaaatgaattaattgaatataatcaca 40826561  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 48317607 - 48317650
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacatatatta 102  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||    
T  48317607 ataatttgagaaaatgaaataattgaatgtaataacatatatta 48317650  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 28322251 - 28322288
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacat 96  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacat 28322288  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 47542545 - 47542582
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacat 96  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  47542545 ataatttgagaaaatgaactatttgaatgtaatcacat 47542582  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 49636875 - 49636838
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcacat 96  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  49636875 ataatttgagaaaatgaattaattgaatgtaatcacat 49636838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 27858350 - 27858386
Alignment:
Q  59 ataatttgagaaaatgaactaattgaatataatcaca 95  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  27858350 ataatttgagaaaatgacctaattgaatgtaatcaca 27858386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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