View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_25 (Length: 314)
Name: NF17962_low_25
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 43018707 - 43018409
Alignment:
| Q |
1 |
gtgaagaaaaatgaagaatttttcattaattgaataaagacttttcaaccgatatatatacacatttgatattgtactcgtaactaacttacactctagt |
100 |
Q |
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| T |
43018707 |
gtgaagaaaaatgaagaatttttcattaattgaataaagacttttcaaccgatatatatacacatttgatattgtactcgtaactaacttacactctagt |
43018608 |
T |
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| Q |
101 |
tgtactacattatatgagaaatgttctacattcagagacttgcaccacaagctacaactactaactctcttctttcacttttatttgttcatggtgcaat |
200 |
Q |
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| T |
43018607 |
tgtactacattatatgagaaatgttctacattcagtgacttgcaccacaagctacaactattaactctcttctttcacttttatttgttcatggtgcaat |
43018508 |
T |
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| Q |
201 |
aactacaagtacattcttgacaattgggaggacaaaaacatgtgcttcattctttagcttagtttcttgcctcacatccaacctaaagacatgcttact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43018507 |
aactacaagtacattcttgacaattgggaggacaaaaacatgtgcttcattctttagcttagtttcttgcttcacatccaacctaaagacatgcttact |
43018409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 35057948 - 35057709
Alignment:
| Q |
7 |
aaaaatgaagaatttttcattaattgaataaagacttttcaaccgatatatatacacatttgatattgtactcgtaactaacttacactctagttgtact |
106 |
Q |
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|||| |||||||||| |||||||||||||| ||| ||| |||| |||||||||| ||||||||| ||||||| |||||||||| ||||| |
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| T |
35057948 |
aaaagtgaagaatttctcattaattgaatagagagtttgcaactgatatatatatacatttgatcatgtactcttaactaactt-----------gtact |
35057860 |
T |
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| Q |
107 |
acat--tatatgagaaatgttctacattcagagacttgcaccacaagctacaactactaactctcttctttcacttttatttgttcatggtgcaataact |
204 |
Q |
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|| | |||||||||||||| ||||||| || ||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
35057859 |
acgtactatatgagaaatgtactacattaagtgacttgcactacaagctacaactattaactct--tctttcacttttatttgttcatggtggaataact |
35057762 |
T |
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| Q |
205 |
acaagtacattcttgacaattgggaggacaaaaacatgtgcttcattctttag |
257 |
Q |
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|||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
35057761 |
acaactacattcttgacaattgggatgacaaaaacctgtgcttcattctttag |
35057709 |
T |
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