View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_26 (Length: 313)
Name: NF17962_low_26
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 23 - 298
Target Start/End: Original strand, 32989675 - 32989950
Alignment:
| Q |
23 |
aaaccaatgctttgttttgtcatgttctgttccttgcgccggttacccgcgcatacaagggtaacagggaattcatgacttgggaagtcgtcgattagtt |
122 |
Q |
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| T |
32989675 |
aaaccaatgctttgttttatcatgttctgttccttgcgccggttacccgcgcatacaagggtaacagggaattcatgacttgggaagtcgtcgattagtt |
32989774 |
T |
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| Q |
123 |
gggccatcgtgaattgggtcgggtttttgaccaaacctgatacttcgatggtccaactatcccattgtgcttttgggacaggtccgtggttacggacata |
222 |
Q |
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| T |
32989775 |
gggccatcgtgaattgggtcgggtttttgaccagacctgatacttcgatggtccaactatcccattgtgcttttgggacaggtccgtggttacggacata |
32989874 |
T |
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| Q |
223 |
gtggagtgggacaggtgtaatgaaaccatgttctactagttcttgaagtggtggctctgagttgaaggggtgtttt |
298 |
Q |
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| T |
32989875 |
gtggagtgggacaggtgtaataaaaccatgttctactagttcttgaagtggtggctctgagttgaaggggtgtttt |
32989950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 32962066 - 32962220
Alignment:
| Q |
77 |
acaagggtaacagggaattcatgacttgggaagtcgtcgattagttgggccatcgtgaattgggtcgggtttttgaccaaacctgatacttcgatggtcc |
176 |
Q |
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| T |
32962066 |
acaagcgtgacaggaaattcacggcttgggaagtcgttgatgagttggtccatcgtgaaacatgctgggttttttaccagaccagttacttcgatggacc |
32962165 |
T |
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| Q |
177 |
aactatcccattgtgcttttgggacaggtccgtggttacggacatagtggagtgg |
231 |
Q |
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| T |
32962166 |
aatcatcccaacatgctttgggaacatgtccgtgattacgaacatagtggagtgg |
32962220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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