View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_27 (Length: 309)

Name: NF17962_low_27
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_27
NF17962_low_27
[»] chr3 (6 HSPs)
chr3 (4-306)||(2772073-2772348)
chr3 (120-213)||(2794706-2794799)
chr3 (108-196)||(2834450-2834536)
chr3 (137-228)||(2801068-2801159)
chr3 (255-289)||(2794825-2794859)
chr3 (26-62)||(2794581-2794617)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 2772073 - 2772348
Alignment:
Q  4 cttacatataaaaccaaactcaagacagttcgctcttcatctacacatcaagtttcataatgctgcttgtgtggaaatgtggaatgaccaaatttctgca 103  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2772073 cttacatataaaaccaaactcaggacagttcactcttcatctacacatcaagtttcataatgctgcttgtgtggaaatgtggaatgaccaaatttctgca 2772172  T
Q  104 atgattcaaaaaatcacttgctaccacattctctttaaaggatcacgatccatctactcacttattaggtgctgaaagttttcctacttccactggaagc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2772173 atgattcaaaaaatcacttgctaccacattctctttaaaggatcacgatccatctactcacttattaggtgctgaaagttttcctacttccactggaagc 2772272  T
Q  204 ttcctaacttagcaacactacataacgcagcttattggatgagctgacattgcaggttctaaactgatttcaacacccatggccacaacctaatgccgtc 303  Q
    ||||                  |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  2772273 ttcc------------------taacgcagcttattggatgagctgacattgcaggttctaaactgatt---------atggccacaacctaatgccgtc 2772345  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 2794706 - 2794799
Alignment:
Q  120 cttgctaccacattctctttaaaggatcacgatccatctactcacttattaggtgctgaaagttttcctacttccactggaagcttcctaactt 213  Q
    ||||||||||||||||||| ||||||||  | ||||||  ||||| ||||||||||||||| ||||| |  ||||| ||||  |||||||||||    
T  2794706 cttgctaccacattctcttcaaaggatcgtggtccatcagctcacctattaggtgctgaaacttttcgtgattccagtggacccttcctaactt 2794799  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 2834536 - 2834450
Alignment:
Q  108 ttcaaaaaatcacttgctaccacattctctttaaaggatcacgatccatctactcacttattaggtgctgaaagttttcctacttccac 196  Q
    ||||| ||| ||||| || |||||||||||  ||||||||| | |||||| |||||||||| ||||| ||||||  |||||||||||||    
T  2834536 ttcaagaaaccacttacttccacattctct--aaaggatcatggtccatcaactcacttatcaggtgttgaaagcattcctacttccac 2834450  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 2801068 - 2801159
Alignment:
Q  137 tttaaaggatcacgatccatctactcacttattaggtgctgaaagttttcctacttccactggaagcttcctaacttagcaacactacataa 228  Q
    |||||||||||| | |||||| |||| ||||||||||  | ||  | |||||||||||| ||||  |||||||||| ||||| |||||||||    
T  2801068 tttaaaggatcatggtccatcaactctcttattaggtattaaatctattcctacttccattggactcttcctaactcagcaatactacataa 2801159  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 2794825 - 2794859
Alignment:
Q  255 gcaggttctaaactgatttcaacacccatggccac 289  Q
    |||||||||||||||||||||||| ||||||||||    
T  2794825 gcaggttctaaactgatttcaacatccatggccac 2794859  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 2794581 - 2794617
Alignment:
Q  26 agacagttcgctcttcatctacacatcaagtttcata 62  Q
    ||||| || ||||||||||||||||||||||||||||    
T  2794581 agacactttgctcttcatctacacatcaagtttcata 2794617  T

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