View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_28 (Length: 307)

Name: NF17962_low_28
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_28
NF17962_low_28
[»] chr3 (9 HSPs)
chr3 (127-273)||(5852295-5852447)
chr3 (16-71)||(5852182-5852237)
chr3 (167-217)||(41971307-41971357)
chr3 (167-213)||(46367424-46367470)
chr3 (172-224)||(55244466-55244518)
chr3 (170-220)||(32385929-32385979)
chr3 (167-220)||(388299-388352)
chr3 (167-211)||(2340754-2340798)
chr3 (176-224)||(31337606-31337654)
[»] chr2 (5 HSPs)
chr2 (166-224)||(8197577-8197635)
chr2 (166-224)||(8202337-8202395)
chr2 (166-223)||(19224970-19225027)
chr2 (172-228)||(7633471-7633527)
chr2 (167-223)||(19235021-19235077)
[»] chr1 (12 HSPs)
chr1 (166-225)||(38869069-38869128)
chr1 (172-223)||(7124330-7124381)
chr1 (172-224)||(48861417-48861471)
chr1 (167-224)||(17233808-17233865)
chr1 (180-224)||(13827630-13827674)
chr1 (172-220)||(17815671-17815719)
chr1 (176-224)||(50636269-50636317)
chr1 (176-223)||(7786977-7787024)
chr1 (166-224)||(6025793-6025851)
chr1 (166-224)||(15707007-15707065)
chr1 (167-224)||(109030-109087)
chr1 (172-212)||(16943355-16943395)
[»] chr5 (5 HSPs)
chr5 (166-224)||(18350938-18350996)
chr5 (172-224)||(41808110-41808162)
chr5 (172-220)||(27998633-27998681)
chr5 (166-206)||(28186818-28186858)
chr5 (169-213)||(15402285-15402329)
[»] chr4 (16 HSPs)
chr4 (166-224)||(29209211-29209269)
chr4 (172-224)||(32339747-32339799)
chr4 (177-224)||(21214633-21214680)
chr4 (166-224)||(40018225-40018283)
chr4 (178-223)||(24496768-24496813)
chr4 (167-224)||(47372839-47372896)
chr4 (172-224)||(31339712-31339764)
chr4 (172-222)||(29801569-29801619)
chr4 (166-224)||(37042700-37042758)
chr4 (166-224)||(40932960-40933018)
chr4 (166-224)||(41192249-41192307)
chr4 (166-220)||(44719397-44719451)
chr4 (167-224)||(54470395-54470452)
chr4 (166-206)||(20999206-20999246)
chr4 (176-224)||(22420763-22420811)
chr4 (172-224)||(31403076-31403128)
[»] chr8 (7 HSPs)
chr8 (172-224)||(23023413-23023465)
chr8 (172-225)||(25117472-25117525)
chr8 (172-224)||(30748651-30748703)
chr8 (172-224)||(37826475-37826527)
chr8 (173-220)||(11733939-11733986)
chr8 (166-224)||(12611685-12611743)
chr8 (166-224)||(23492222-23492280)
[»] chr6 (7 HSPs)
chr6 (172-224)||(1747987-1748039)
chr6 (166-220)||(586042-586096)
chr6 (174-224)||(4245916-4245966)
chr6 (172-222)||(7267427-7267477)
chr6 (166-220)||(32945440-32945494)
chr6 (187-220)||(7384079-7384112)
chr6 (172-224)||(5081028-5081080)
[»] chr7 (6 HSPs)
chr7 (172-220)||(6807396-6807444)
chr7 (174-214)||(36245300-36245340)
chr7 (172-224)||(40008473-40008525)
chr7 (172-220)||(40138990-40139038)
chr7 (166-220)||(22174192-22174246)
chr7 (166-223)||(46990082-46990139)
[»] scaffold0024 (1 HSPs)
scaffold0024 (166-224)||(82906-82964)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 5852295 - 5852447
Alignment:
Q  127 gcatacaacaacaacaaccaactgttctattccattaagcg------gctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    |||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5852295 gcatacaacaacaacaaccaactgttctattccattaagcgaggtcggctgcatggatcaaacgacgtcataatactctatcatatatcatatttctatc 5852394  T
Q  221 caaccaatgttannnnnnnagtaatatttctatccaacttattaacctccaga 273  Q
    ||| ||||||||       ||||||||||||||||||||||||||||||||||    
T  5852395 caaacaatgttatttttttagtaatatttctatccaacttattaacctccaga 5852447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 5852182 - 5852237
Alignment:
Q  16 acccactaaggtaaccaaacaaaaatatgcatgtatatttctatttccatttctga 71  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5852182 acccactaaggtaaccaaacaaaaatatgcatgtatatttctttttccatttctga 5852237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 41971307 - 41971357
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttct 217  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||||||    
T  41971307 ggctacatggatcaaacaacgtcataatgttctatcatatatcatatttct 41971357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 46367424 - 46367470
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatat 213  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||    
T  46367424 ggctacatggatcaaacgacgtcataatgttctatcatatatcatat 46367470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 55244518 - 55244466
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  55244518 catggatcaaacgacaccataatgttctatcatataccatatttctatccaac 55244466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 32385929 - 32385979
Alignment:
Q  170 tgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    ||||| ||||||| || |||||||||||||||| |||||||||||| ||||    
T  32385929 tgcatagatcaaatgatgtcataatgctctatcttatatcatatttttatc 32385979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 388299 - 388352
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    |||| ||| |||||||  ||||||||||||||||||||||| | ||||||||||    
T  388299 ggctacattgatcaaattacgtcataatgctctatcatataccgtatttctatc 388352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 2340754 - 2340798
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcat 211  Q
    |||| |||||||||||| ||| ||||||| |||||||||||||||    
T  2340754 ggcttcatggatcaaacaacgccataatgttctatcatatatcat 2340798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 31337606 - 31337654
Alignment:
Q  176 gatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||| | ||||||||| ||||||| ||| ||||||||||||||||    
T  31337606 gatcaaacaatgtcataatgttctatcaaataccatatttctatccaac 31337654  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 8197577 - 8197635
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  8197577 cggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaac 8197635  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 8202337 - 8202395
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  8202337 cggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaac 8202395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 19225027 - 19224970
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaa 223  Q
    ||||| ||||||||||||||| ||||| || ||||||||||||| ||| | |||||||    
T  19225027 cggctacatggatcaaacgacatcatagtgttctatcatatatcgtatatgtatccaa 19224970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 7633471 - 7633527
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaaccaat 228  Q
    ||||||||||||||||| ||| |||  ||||||||||||||| | ||||||| ||||    
T  7633471 catggatcaaacgacgttatattgcattatcatatatcatatgtttatccaaacaat 7633527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 19235021 - 19235077
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaa 223  Q
    |||| ||||||| |||||||| || |||| ||||||| ||| |||||||||||||||    
T  19235021 ggctacatggattaaacgacgacagaatgttctatcaaataccatatttctatccaa 19235077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 38869128 - 38869069
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaacc 225  Q
    ||||| |||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||    
T  38869128 cggctacatggatcaaacgacgccataatgttctatcatataccatatatctatccaacc 38869069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 7124381 - 7124330
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaa 223  Q
    |||||||||||||||  |||||||||||||| |||| |||||||||||||||    
T  7124381 catggatcaaacgacaccataatgctctatcctataccatatttctatccaa 7124330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 48861417 - 48861471
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatc--atatatcatatttctatccaac 224  Q
    |||| ||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  48861417 catgaatcaaacgacgtcataatgctctatcaaatataccatatttctatccaac 48861471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 17233808 - 17233865
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||| |||||||||||||  | ||||||||||||||||||| |||||| |||||||||    
T  17233808 ggctacatggatcaaacgctgacataatgctctatcatataccatattcctatccaac 17233865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 13827630 - 13827674
Alignment:
Q  180 aaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||    
T  13827630 aaacaacgtcataatgttctatcatataccatatttctatccaac 13827674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 17815719 - 17815671
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    |||||||||||||||  || |||||||||||||||| ||||||||||||    
T  17815719 catggatcaaacgacaccaaaatgctctatcatataccatatttctatc 17815671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 50636317 - 50636269
Alignment:
Q  176 gatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||||| || ||||||||||||||||||||| ||||||| ||||||||    
T  50636317 gatcaaatgatgtcataatgctctatcatataccatatttttatccaac 50636269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 7786977 - 7787024
Alignment:
Q  176 gatcaaacgacgtcataatgctctatcatatatcatatttctatccaa 223  Q
    |||||||||||||| ||||| | ||| |||||||||||||||||||||    
T  7786977 gatcaaacgacgtcttaatgttttattatatatcatatttctatccaa 7787024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 6025851 - 6025793
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| ||||||||||| |||| ||| ||| ||||||| ||| ||||||||||||||||    
T  6025851 cggctacatggatcaaatgacgccatcatgttctatcagataccatatttctatccaac 6025793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 15707007 - 15707065
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||||| ||||||||||| |||||||||| || |||| | | ||||||||||||||||    
T  15707007 cggctgcgtggatcaaacggcgtcataatgttcaatcaaacaccatatttctatccaac 15707065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 109030 - 109087
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||| ||||||||||| |||| ||||||| ||||||||| ||||||| | ||||||||    
T  109030 ggctacatggatcaaatgacgccataatgttctatcatacatcatatatttatccaac 109087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 16943395 - 16943355
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcata 212  Q
    ||||||||||||| || ||||||| ||||||||||||||||    
T  16943395 catggatcaaacgccgccataatgttctatcatatatcata 16943355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 18350938 - 18350996
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||||||||||||||||||||||| |||| || ||| ||||||||||||||||    
T  18350938 cggctacatggatcaaacgacgtcataatgttctaacaaataccatatttctatccaac 18350996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 41808162 - 41808110
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  41808162 catggatcaaacgatgtcataatgttctatcatacatcatatttatatccaac 41808110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 27998681 - 27998633
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    |||||||||||||||||||||||  ||||||||||||||| || |||||    
T  27998681 catggatcaaacgacgtcataatattctatcatatatcatgttcctatc 27998633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 28186818 - 28186858
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatat 206  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  28186818 cggctgcatggatcaaacgacgccataatgttctatcatat 28186858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 15402329 - 15402285
Alignment:
Q  169 ctgcatggatcaaacgacgtcataatgctctatcatatatcatat 213  Q
    ||||||||||||||||||||||||||  || ||||| ||||||||    
T  15402329 ctgcatggatcaaacgacgtcataatattccatcatttatcatat 15402285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 29209211 - 29209269
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| ||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  29209211 cggctacattgatcaaacaacgccataatgctctatcatataccatatttctatccaac 29209269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 32339799 - 32339747
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||||||||| ||||||  ||||||||||||||||| ||||||||||    
T  32339799 catggatcaaacgacgccataattttctatcatatatcatatctctatccaac 32339747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 21214633 - 21214680
Alignment:
Q  177 atcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  21214633 atcaaacaacgtcataatgctctatcatacatcatatttctctccaac 21214680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 40018225 - 40018283
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||||  |||||||||    
T  40018225 cggctacatggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaac 40018283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 24496768 - 24496813
Alignment:
Q  178 tcaaacgacgtcataatgctctatcatatatcatatttctatccaa 223  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||    
T  24496768 tcaaacgacctcataatgctctatcatatctcatatttgtatccaa 24496813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 47372896 - 47372839
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||| |||||||||||||||  ||||||| ||||| ||||| ||||||||||||||||    
T  47372896 ggctacatggatcaaacgactccataatgttctataatataccatatttctatccaac 47372839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 31339764 - 31339712
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||| ||||||||||||||||| |||||||| || |||||||| |||||||    
T  31339764 catggaccaaacgacgtcataatgttctatcatgtaccatatttcgatccaac 31339712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 29801619 - 29801569
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatcca 222  Q
    |||||||||||||||| ||||||  || ||||||||||||||||| |||||    
T  29801619 catggatcaaacgacgccataattttcaatcatatatcatatttcaatcca 29801569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 37042700 - 37042758
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||||||||||||||  ||||||| ||||||| ||| | ||||||||||||||    
T  37042700 cggctacatggatcaaacgacaccataatgttctatcaaataccgtatttctatccaac 37042758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 40932960 - 40933018
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||| |||||||| || ||||||| |||||||||||||||||  |||||||||    
T  40932960 cggctacatgcatcaaacgccgccataatgttctatcatatatcatatccctatccaac 40933018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 41192307 - 41192249
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||||||| ||||| | ||||||| |||| |||||| ||||||||||||||||    
T  41192307 cggctacatggatcgaacgaagccataatgttctaccatataccatatttctatccaac 41192249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 44719397 - 44719451
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    ||||| |||||||||||||||  ||||||||||||| ||||| | ||||||||||    
T  44719397 cggctacatggatcaaacgacaccataatgctctattatataccgtatttctatc 44719451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 54470452 - 54470395
Alignment:
Q  167 ggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||| ||||||||||| ||||  |||||||||  ||||||| ||||||||||||||||    
T  54470452 ggctacatggatcaaatgacgcaataatgctcagtcatataccatatttctatccaac 54470395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 20999246 - 20999206
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatat 206  Q
    ||||| || |||||||||||||||||||||||||| |||||    
T  20999246 cggctacaaggatcaaacgacgtcataatgctctaccatat 20999206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 22420763 - 22420811
Alignment:
Q  176 gatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||| ||| |||||||||||||||| || ||||| ||||||||||    
T  22420763 gatcaaacaacgccataatgctctatcatttaccatatctctatccaac 22420811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 31403076 - 31403128
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||| | ||  ||||||||||||||||||| || |||||||||||||    
T  31403076 catggatcaagcaacaccataatgctctatcatataccacatttctatccaac 31403128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 23023465 - 23023413
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||||||||||||||||  ||||||||||||||| || |||||||||    
T  23023465 catggatcaaacgacgtcataatattctatcatatatcatgttcctatccaac 23023413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 25117525 - 25117472
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaacc 225  Q
    |||||||||||| | ||||||||| ||||||||||||||| | |||||||||||    
T  25117525 catggatcaaacaatgtcataatgttctatcatatatcatttctctatccaacc 25117472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 30748703 - 30748651
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||||||||| ||| |||||||| || || ||||||||||||||||||||||    
T  30748703 catggatcaaatgacatcataatgttcaattatatatcatatttctatccaac 30748651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 37826527 - 37826475
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||||||||| || | |||||| |||||||||||| ||||||||||||||||    
T  37826527 catggatcaaatgatgccataatactctatcatataccatatttctatccaac 37826475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 11733986 - 11733939
Alignment:
Q  173 atggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    |||| |||||||||| ||||||||||||||| ||| ||||||||||||    
T  11733986 atggttcaaacgacgccataatgctctatcacataccatatttctatc 11733939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 12611743 - 12611685
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| |||||||||||||||  ||||| | |||| ||||||||||||||||| |||||    
T  12611743 cggctacatggatcaaacgacaccataaagttctaacatatatcatatttctacccaac 12611685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 23492280 - 23492222
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| ||||||| ||| |||  |||| || ||||||||||||||||||||||||||||    
T  23492280 cggctacatggattaaatgacaccatagtgttctatcatatatcatatttctatccaac 23492222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 1747987 - 1748039
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||||||||||| ||||| |||||||||||  |||||||||||||||    
T  1747987 catggatcaaacgacgtcgtaatgttctatcatatactatatttctatccaac 1748039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 586096 - 586042
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    ||||| |||| |||||| |||||||||||| |||||||||||  |||||||||||    
T  586096 cggctccatgaatcaaatgacgtcataatgttctatcatatacaatatttctatc 586042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 4245916 - 4245966
Alignment:
Q  174 tggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||||| ||||||||| ||||||| ||| ||||||| ||||||||    
T  4245916 tggatcaaacgatgtcataatgttctatcaaataccatatttttatccaac 4245966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 7267427 - 7267477
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatcca 222  Q
    ||||||||||||||| |||||||| |  |||||||||||||||| ||||||    
T  7267427 catggatcaaacgacatcataatgttgcatcatatatcatatttttatcca 7267477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 32945494 - 32945440
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    ||||| |||||||||||||||  ||||||| |||||||||||  |||||||||||    
T  32945494 cggctacatggatcaaacgacaccataatgttctatcatataaaatatttctatc 32945440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 7384112 - 7384079
Alignment:
Q  187 gtcataatgctctatcatatatcatatttctatc 220  Q
    ||||||||||||||||| ||||||||||||||||    
T  7384112 gtcataatgctctatcaaatatcatatttctatc 7384079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 5081080 - 5081028
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||||||||| ||||| ||| || ||||||||| ||||||||| ||||||||    
T  5081080 catggatcaaatgacgttatagtgttctatcataaatcatatttgtatccaac 5081028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 6807444 - 6807396
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    |||||||||||||||| ||||||| ||||||||| | ||||||||||||    
T  6807444 catggatcaaacgacgccataatgttctatcatacaccatatttctatc 6807396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 36245300 - 36245340
Alignment:
Q  174 tggatcaaacgacgtcataatgctctatcatatatcatatt 214  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  36245300 tggatcaaacgacgtcataatgttctatcatataccatatt 36245340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 40008473 - 40008525
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    |||||||||||| ||| ||||||| ||||||||||||||| | ||||||||||    
T  40008473 catggatcaaacaacgacataatgttctatcatatatcatgtctctatccaac 40008525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 40138990 - 40139038
Alignment:
Q  172 catggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||||||    
T  40138990 catggatcaaatgacgtcataatattctatcatatgtcatatttctatc 40139038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 22174246 - 22174192
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatc 220  Q
    ||||| |||||||||||| ||| ||||||| ||||||| ||| ||||||||||||    
T  22174246 cggctacatggatcaaacaacgccataatgttctatcacataccatatttctatc 22174192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 46990139 - 46990082
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaa 223  Q
    ||||| |||| |||||| ||| |||||||||||||||| ||||||||| | |||||||    
T  46990139 cggctacatgtatcaaatgacttcataatgctctatcagatatcatatatttatccaa 46990082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 82964 - 82906
Alignment:
Q  166 cggctgcatggatcaaacgacgtcataatgctctatcatatatcatatttctatccaac 224  Q
    ||||| ||||||||||| ||||||||| || ||||||||| |||||||||  |||||||    
T  82964 cggctacatggatcaaatgacgtcatagtgttctatcataaatcatatttggatccaac 82906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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