View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_3 (Length: 642)
Name: NF17962_low_3
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 64 - 617
Target Start/End: Original strand, 43260834 - 43261386
Alignment:
| Q |
64 |
gttgtaatatgatcatcagagacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43260834 |
gttgtaatatgatcatcagagacactattattaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaa |
43260933 |
T |
|
| Q |
164 |
gctgccttgacaacaaaggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaa |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43260934 |
gctgccttgacaacaaaggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaa |
43261033 |
T |
|
| Q |
264 |
gagatgatgacgacactagagcttgtgtagccatgtttgtccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtta |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43261034 |
gagatgatgacgacactagagcttgtgtagccatgtttttccctcctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtta |
43261133 |
T |
|
| Q |
364 |
agaatgaatgctagatattgaagtaactataagtcaaatggaggaagatatgaagaactctaagccacatgcacgcaagcaacgtggaagttcttgtggt |
463 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43261134 |
agaatgaatgatagatattgaagtaactataagtcaaatggaggaagatatgaagaactctaagccacatgcacccaagcaacgtggaagttcttgtggt |
43261233 |
T |
|
| Q |
464 |
gaatattgcatggtgcaatatagtaaagatgagagtgtgatctagttctccaaccatgtttatacacgtaatatgatgaatcggataaggaatctcatgt |
563 |
Q |
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| T |
43261234 |
gaatattgcatggtgcaatatagtaaagatgagagtgtgatctagttctccaaccatgtttatacacgtaatatgatgaatcggataaggaatctcatgt |
43261333 |
T |
|
| Q |
564 |
tattcccactgctgttacgtttttgttggtatactaaattgaaatgtaacttac |
617 |
Q |
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| T |
43261334 |
tattcccactgctgttacgtttttgttggtatac-aaattgaaatgtaacttac |
43261386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 64 - 380
Target Start/End: Original strand, 43257245 - 43257554
Alignment:
| Q |
64 |
gttgtaatatgatcatcagagacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaa |
163 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| || |
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| T |
43257245 |
gttgtaatatggtcatctgagacactattattaat-aaaaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcag----- |
43257338 |
T |
|
| Q |
164 |
gctgccttgacaacaaaggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaa |
263 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
43257339 |
-ctgccttgacaacaaaggatccttttctagaagacccaattgaagatgggagtgatcttgctccaaaactctgtcttacagcttcagctgcaaaagtaa |
43257437 |
T |
|
| Q |
264 |
gagatgatgacgacactagagcttgtgtagccatgtttgtccctcctctgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtta |
363 |
Q |
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||||||| ||||||| |||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43257438 |
gagatgacgacgacaatagaacttgtgtagccatgtttttcccttctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtta |
43257537 |
T |
|
| Q |
364 |
agaatgaatgctagata |
380 |
Q |
| |
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|||||||||| |||||| |
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| T |
43257538 |
agaatgaatgatagata |
43257554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 427
Target Start/End: Original strand, 43257554 - 43257582
Alignment:
| Q |
399 |
aaatggaggaagatatgaagaactctaag |
427 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43257554 |
aaatggaggaagatatgaagaactctaag |
43257582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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