View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_31 (Length: 288)

Name: NF17962_low_31
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_31
NF17962_low_31
[»] chr8 (1 HSPs)
chr8 (10-288)||(23358258-23358536)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 23358536 - 23358258
Alignment:
Q  10 ataatactcatcctttttgtacacaaaatcgacgttgaataatggaacatgtttcaatttttgtgtagcagcgaaacgaataccattgaaaggtccactt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23358536 ataatactcatcctttttgtacacaaaatcgacgttgaataatggaacatgttttaatttttgtgtagcagcgaaacgaataccattgaaaggtccactt 23358437  T
Q  110 ctgtatatcatcgacgaaccattccttatctccgattcaggattgtcacttcttatgtagccataagtcgtttgacccgaagaagggtcatcccaattct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23358436 ctgtatatcatcgacgaaccattccttatctccgattcaggattgtcacttcttatgtagccataagtcgtttgacccgaagaagggtcatcccaattct 23358337  T
Q  210 tccaagctgttagttgcctattaagaccgctcgtaaggttccaaccaagcttcattcctggaagaattgtatcactagg 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23358336 tccaagctgttagttgcctattaagaccgctcgtaaggttccaaccaagcttcattcctggaagaattgtatcactagg 23358258  T

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