View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_34 (Length: 282)
Name: NF17962_low_34
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 2786186 - 2785917
Alignment:
| Q |
1 |
attcatgttaaagttgatgatgtatctgtcgcaccagttacgggggcacccccatcttcattgccatcggtgaatggatctattgctaaccggcagccaa |
100 |
Q |
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| T |
2786186 |
attcatgttaaagttgacgatgtatctgtcgcaccagttacgggggcacccccatcttcattgccatcggtgaatggatctattgctaaccggcagccaa |
2786087 |
T |
|
| Q |
101 |
tacctaatgtgaatgtgactcctgctactgtaaaagttgagccagtgcctgtaaaagttgagccattgccggtaaaagttgagcgtggcgtaaaaattga |
200 |
Q |
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|||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2786086 |
tacctaatgtcagtgtgactcctgctactgtaaaagctgagccagtgcctgtaaaagttgagccattgccggtaaaagttgagcgtgtcgtaaaaattga |
2785987 |
T |
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| Q |
201 |
gcgtggcacggcattttctggaccatcagtaattactagttcgggatatcttactgcttctacacaggtt |
270 |
Q |
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|||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785986 |
gcgtggcacgacatcttctggaccgccagtaattactagttcgggatatcttactgcttctacacaggtt |
2785917 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 22519728 - 22519795
Alignment:
| Q |
70 |
gtgaatggatctattgctaaccggcagccaatacctaatgtgaatgtgactcctgctactgtaaaagt |
137 |
Q |
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| T |
22519728 |
gtgaatggatctattccgaaccggcaaccaatacctgctgggaatgtgactcctgctactgtaaaagt |
22519795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 22518331 - 22518378
Alignment:
| Q |
21 |
tgtatctgtcgcaccagttacgggggcacccccatcttcattgccatc |
68 |
Q |
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| T |
22518331 |
tgtatctgccacaccagttacgggggcacccccatcttcattgccatc |
22518378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 22520289 - 22520342
Alignment:
| Q |
217 |
tctggaccatcagtaattactagttcgggatatcttactgcttctacacaggtt |
270 |
Q |
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|||||||| |||||||| |||||||| |||| ||||||||||||| |||||||| |
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| T |
22520289 |
tctggaccgtcagtaataactagttctggatctcttactgcttctgcacaggtt |
22520342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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