View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_36 (Length: 276)
Name: NF17962_low_36
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 934934 - 935185
Alignment:
| Q |
17 |
ctcattgtctacattgaagttaattacaagttacaattcaaccttacaattaaattaaaagttcaaacaaataataccaatatcacaaatcacaatattc |
116 |
Q |
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| T |
934934 |
ctcattgtctacattgaagttaattacaagttacaattcaaccttacaattacattaaaagttcaaacaaataataccaatatcacaaatcacaatattc |
935033 |
T |
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| Q |
117 |
taagttaatcatgattacaaaggaatgaagatacctgtatttggtgtaacccaagcacaccttttcttgccttccaagccatcaatcgattccacctcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935034 |
taagttaatcatgattacaaaggaatgaagatacctgtatttggtgtaacccaagcacaccttttcttgccttccaagccatcaatcgattccacctcaa |
935133 |
T |
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| Q |
217 |
caggagcaggaacagcaacaactgcatcaatactcaccttctcaacctttgc |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935134 |
caggagcaggaacagcaacaactgcatcaatactcaccttctcaacctttgc |
935185 |
T |
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