View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_4 (Length: 591)

Name: NF17962_low_4
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_4
NF17962_low_4
[»] chr8 (23 HSPs)
chr8 (71-575)||(36005979-36006499)
chr8 (415-565)||(37517577-37517727)
chr8 (415-572)||(24125509-24125665)
chr8 (477-553)||(39435167-39435243)
chr8 (346-389)||(5526224-5526267)
chr8 (264-389)||(14600362-14600489)
chr8 (472-547)||(25021328-25021403)
chr8 (265-312)||(34365890-34365937)
chr8 (473-545)||(500735-500807)
chr8 (346-389)||(1809902-1809945)
chr8 (346-389)||(2234134-2234177)
chr8 (346-389)||(2968937-2968980)
chr8 (346-389)||(7291569-7291612)
chr8 (264-374)||(15665864-15665970)
chr8 (346-389)||(24790834-24790877)
chr8 (346-389)||(31202870-31202913)
chr8 (341-375)||(37720235-37720269)
chr8 (346-386)||(9501990-9502030)
chr8 (349-385)||(17693412-17693448)
chr8 (265-374)||(18190536-18190641)
chr8 (353-389)||(30026546-30026582)
chr8 (264-312)||(41362070-41362118)
chr8 (349-389)||(41362158-41362198)
[»] chr5 (16 HSPs)
chr5 (415-565)||(15291492-15291642)
chr5 (415-553)||(27337193-27337331)
chr5 (472-554)||(433791-433873)
chr5 (488-547)||(25662859-25662918)
chr5 (346-389)||(6635670-6635713)
chr5 (346-389)||(7771477-7771520)
chr5 (346-389)||(17331750-17331793)
chr5 (346-389)||(23881772-23881815)
chr5 (346-389)||(32309918-32309961)
chr5 (346-389)||(34431486-34431529)
chr5 (346-389)||(39531064-39531107)
chr5 (472-565)||(3113692-3113785)
chr5 (264-374)||(6074421-6074527)
chr5 (346-386)||(586162-586202)
chr5 (265-301)||(40564911-40564947)
chr5 (349-389)||(42505069-42505109)
[»] chr2 (35 HSPs)
chr2 (415-565)||(9684884-9685034)
chr2 (415-565)||(18744487-18744637)
chr2 (472-565)||(20142266-20142359)
chr2 (472-565)||(41867434-41867527)
chr2 (421-565)||(17345126-17345270)
chr2 (472-565)||(44686905-44686998)
chr2 (477-565)||(4412597-4412685)
chr2 (472-546)||(28225507-28225580)
chr2 (264-374)||(5071055-5071161)
chr2 (415-563)||(19161295-19161443)
chr2 (349-389)||(10286670-10286710)
chr2 (346-389)||(3527408-3527451)
chr2 (346-389)||(13878665-13878708)
chr2 (346-389)||(14018790-14018833)
chr2 (346-389)||(16136500-16136543)
chr2 (346-389)||(20560789-20560832)
chr2 (346-389)||(25068263-25068306)
chr2 (346-389)||(29543215-29543258)
chr2 (346-389)||(33012470-33012513)
chr2 (346-389)||(35333927-35333970)
chr2 (346-389)||(44942708-44942751)
chr2 (267-313)||(4615265-4615311)
chr2 (266-386)||(4739669-4739791)
chr2 (264-314)||(11931195-11931245)
chr2 (264-301)||(4604062-4604099)
chr2 (260-301)||(30933567-30933608)
chr2 (346-387)||(32015675-32015716)
chr2 (264-312)||(13548655-13548703)
chr2 (264-312)||(17056212-17056260)
chr2 (264-312)||(17068659-17068707)
chr2 (264-312)||(17095229-17095277)
chr2 (349-385)||(25508870-25508906)
chr2 (349-389)||(31908473-31908513)
chr2 (257-301)||(38535050-38535094)
chr2 (349-389)||(43696293-43696333)
[»] chr1 (15 HSPs)
chr1 (420-565)||(28040601-28040746)
chr1 (415-565)||(19035915-19036065)
chr1 (473-568)||(15585345-15585440)
chr1 (415-565)||(37200743-37200893)
chr1 (260-389)||(28677795-28677926)
chr1 (346-389)||(28666480-28666523)
chr1 (346-389)||(37822019-37822062)
chr1 (264-389)||(44517486-44517613)
chr1 (264-374)||(13691448-13691554)
chr1 (346-389)||(4882033-4882076)
chr1 (346-389)||(15390908-15390951)
chr1 (346-389)||(25032759-25032802)
chr1 (346-389)||(29205690-29205733)
chr1 (338-389)||(8893684-8893736)
chr1 (338-389)||(34659311-34659363)
[»] chr7 (18 HSPs)
chr7 (472-553)||(5827754-5827835)
chr7 (264-389)||(42603435-42603562)
chr7 (264-374)||(21328983-21329089)
chr7 (472-563)||(24528080-24528171)
chr7 (265-389)||(27535767-27535892)
chr7 (267-389)||(4621036-4621160)
chr7 (346-389)||(11833440-11833483)
chr7 (346-389)||(21991084-21991127)
chr7 (346-389)||(44482534-44482577)
chr7 (346-389)||(48643482-48643525)
chr7 (264-301)||(22751725-22751762)
chr7 (349-389)||(2623017-2623057)
chr7 (349-389)||(9137817-9137857)
chr7 (346-386)||(22747168-22747208)
chr7 (349-389)||(24533555-24533595)
chr7 (349-385)||(25286989-25287025)
chr7 (265-301)||(37593422-37593458)
chr7 (346-386)||(45482474-45482514)
[»] chr6 (22 HSPs)
chr6 (416-553)||(7200043-7200180)
chr6 (415-553)||(34304997-34305135)
chr6 (415-572)||(8374767-8374924)
chr6 (264-389)||(8693327-8693454)
chr6 (416-538)||(29337556-29337678)
chr6 (265-389)||(2488461-2488587)
chr6 (265-389)||(4660767-4660893)
chr6 (265-389)||(8644552-8644672)
chr6 (264-389)||(19402508-19402635)
chr6 (415-504)||(32120477-32120566)
chr6 (264-312)||(5416967-5417015)
chr6 (346-389)||(5146348-5146391)
chr6 (346-389)||(12653974-12654017)
chr6 (346-389)||(15589781-15589824)
chr6 (346-389)||(23654671-23654714)
chr6 (346-389)||(30813479-30813522)
chr6 (346-389)||(31804615-31804658)
chr6 (265-302)||(6419603-6419640)
chr6 (472-581)||(23910816-23910925)
chr6 (509-565)||(45232-45288)
chr6 (349-385)||(11321345-11321381)
chr6 (346-374)||(19760189-19760217)
[»] chr4 (24 HSPs)
chr4 (415-563)||(53170988-53171136)
chr4 (265-389)||(27091047-27091173)
chr4 (415-464)||(23809168-23809217)
chr4 (473-565)||(16958023-16958115)
chr4 (260-390)||(31522280-31522412)
chr4 (346-389)||(7083477-7083520)
chr4 (346-389)||(8712930-8712973)
chr4 (438-572)||(24222372-24222506)
chr4 (265-389)||(46268005-46268130)
chr4 (472-554)||(56461640-56461722)
chr4 (487-563)||(32335341-32335417)
chr4 (346-389)||(7084364-7084407)
chr4 (346-389)||(13965965-13966008)
chr4 (346-389)||(14346832-14346875)
chr4 (346-389)||(24826061-24826104)
chr4 (346-389)||(38434999-38435042)
chr4 (346-389)||(42197975-42198018)
chr4 (346-389)||(45350726-45350769)
chr4 (346-389)||(45360205-45360248)
chr4 (264-314)||(7860942-7860992)
chr4 (472-553)||(25707002-25707084)
chr4 (265-303)||(46775610-46775648)
chr4 (346-386)||(6882366-6882406)
chr4 (349-389)||(41837739-41837779)
[»] chr3 (27 HSPs)
chr3 (472-554)||(53786207-53786289)
chr3 (264-389)||(2192416-2192543)
chr3 (264-389)||(13701666-13701793)
chr3 (265-389)||(105712-105837)
chr3 (265-389)||(4019922-4020042)
chr3 (472-565)||(35236616-35236709)
chr3 (260-312)||(4082042-4082094)
chr3 (346-389)||(1074558-1074601)
chr3 (346-389)||(11819506-11819549)
chr3 (346-389)||(21803932-21803975)
chr3 (346-389)||(24483360-24483403)
chr3 (346-389)||(40012936-40012979)
chr3 (346-389)||(48401514-48401557)
chr3 (415-554)||(49018451-49018590)
chr3 (346-389)||(49627768-49627811)
chr3 (346-389)||(55090363-55090406)
chr3 (270-312)||(6903105-6903147)
chr3 (347-389)||(48855300-48855342)
chr3 (266-312)||(53962443-53962489)
chr3 (421-458)||(44431438-44431475)
chr3 (260-301)||(51990629-51990670)
chr3 (348-389)||(54706396-54706437)
chr3 (349-389)||(14585887-14585927)
chr3 (349-389)||(19645615-19645655)
chr3 (264-312)||(28995052-28995100)
chr3 (349-389)||(50981130-50981170)
chr3 (349-389)||(51084264-51084304)
[»] scaffold0288 (1 HSPs)
scaffold0288 (265-389)||(20932-21058)
[»] scaffold0186 (1 HSPs)
scaffold0186 (415-542)||(20232-20363)
[»] scaffold0294 (1 HSPs)
scaffold0294 (264-386)||(3726-3850)
[»] scaffold1294 (1 HSPs)
scaffold1294 (265-312)||(1099-1146)
[»] scaffold0999 (1 HSPs)
scaffold0999 (350-389)||(2117-2156)
[»] scaffold0536 (1 HSPs)
scaffold0536 (346-389)||(3317-3360)
[»] scaffold0155 (1 HSPs)
scaffold0155 (346-389)||(35497-35540)
[»] scaffold0006 (1 HSPs)
scaffold0006 (266-314)||(35996-36044)


Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 71 - 575
Target Start/End: Complemental strand, 36006499 - 36005979
Alignment:
Q  71 gtgagtaggattgttggtcattgaacttgttgtcatcgatcaatttcatcttttcattttttgaaataacaatattgtcccgcaatttg----------- 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||               
T  36006499 gtgagtaggattgttggtcattgaacttgttgtcatcgatcaatttcgtcttttcattttttgaaatagcaatattgtccctcaatttgcttcacaacca 36006400  T
Q  160 -------agtacctccttctagtccagatgttagatatgatgacgtgtaacgttaaagattgatgaccatgttacatgccgtatatttaacgttaaaggc 252  Q
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||  |    
T  36006399 tcaaatgagtacccccttctagtccagatgttagatatgatgacgtgtaacgttaaagattgatgaccatgttacatgtggtatatttaacgttaaaaac 36006300  T
Q  253 ttacacattttccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatg 352  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36006299 ttacacattttccattttatgctattaacacagatattgtgaatttgtttgtagattcattcatcttgttctttatgaatttgtattgcattgatcgatg 36006200  T
Q  353 tactctatcaatttgagtgaataaacatcgtttatttcaagttnnnnnnntcacattagtcattcaagatatggaagtgaaatttgacatgaccacaaga 452  Q
    |||||||||||||||||||||||||||| ||||||||| |||        ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36006199 tactctatcaatttgagtgaataaacattgtttatttctagtcaaaaaaatcacattagtcattcaagatatggaagtgaagtttgacatgaccacaaga 36006100  T
Q  453 tagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagt 552  Q
    |||||| ||||||||||||||||||||||| || ||||||||||  || ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36006099 tagaaagcaattctggagggtttgcaagcaacacatgctcaaga--ttattcaagctatcccaatttatgggttaggtcatcatatgtcaccagtagagt 36006002  T
Q  553 attatactatcctcaaatatggc 575  Q
    |||||||||||||||||||||||    
T  36006001 attatactatcctcaaatatggc 36005979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 415 - 565
Target Start/End: Complemental strand, 37517727 - 37517577
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaa-atcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcc 513  Q
    |||| |||||| |||| || |||||||||||||| |||||||| || | || |||| | ||||||||||||| ||||||| |||||||||| || |||||    
T  37517727 ttcatgatatgaaagttaagtttgacatgaccacgagatagaagataatttttggatg-tttgcaagcagcacatgctcatgattttcttctaagtatcc 37517629  T
Q  514 caatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    | ||| ||||||||||||| |||||||||||||| |||||| ||| ||||||    
T  37517628 cgattgatgggttaggtcaacatatgtcaccagtggagtatcataatatcct 37517577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 415 - 572
Target Start/End: Complemental strand, 24125665 - 24125509
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||||||||||||||| || ||||||||||| || |||||| |  ||||  | ||  ||||||||||| || ||||||| |||||||||| | |||||||    
T  24125665 ttcaagatatggaagttaagtttgacatgacaacgagataggaggcaatattagaatgtttgcaagcatcacatgctcaggattttcttctagctatccc 24125566  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaaatat 572  Q
     ||| |||||||||||||  |||||||| |||| |||||   ||||||||| ||||||    
T  24125565 gattgatgggttaggtcaggatatgtca-cagtggagtaccgtactatccttaaatat 24125509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 477 - 553
Target Start/End: Complemental strand, 39435243 - 39435167
Alignment:
Q  477 caagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagta 553  Q
    |||||| || |||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||| ||| |||||    
T  39435243 caagcaccacatgctcaagattttcttctagctatcccaattgatgggttaggtcagcatatgtcactagttgagta 39435167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 5526224 - 5526267
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  5526224 atcgatgtactctatcaatttgaatgaataaatatcgtttattt 5526267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 14600489 - 14600362
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 361  Q
    |||||||||||||||||||| ||| |||||| ||||||  ||||||||| | | ||||| ||   |||||   ||| | |||| |||||||||||||||     
T  14600489 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcatcctttttgtttttagcgaatttaaatttgtattgtatcgatgtactctatt 14600390  T
Q  362 aatttgagtgaataaacatcgtttattt 389  Q
    ||||||| |||||||| |||||||||||    
T  14600389 aatttgaatgaataaatatcgtttattt 14600362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 547
Target Start/End: Original strand, 25021328 - 25021403
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagt 547  Q
    |||||||||||||| |||||||||||||||||| |  |||||  ||| |||||||| |||| || |||||||||||    
T  25021328 gtttgcaagcagcacatgctcaagattttcttctagttatccatattgatgggttaagtcagcacatgtcaccagt 25021403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 34365890 - 34365937
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  34365890 cgttttatgctattaacataaatattgtgagtttgtttgcagattcat 34365937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 545
Target Start/End: Complemental strand, 500807 - 500735
Alignment:
Q  473 tttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcacca 545  Q
    ||||||||||||| ||||||| |||||||||| | | ||||  ||| ||| ||||||||| ||||||||||||    
T  500807 tttgcaagcagcatatgctcatgattttcttctagcaatcctgattgatgagttaggtcagcatatgtcacca 500735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 1809945 - 1809902
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  1809945 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 1809902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 2234177 - 2234134
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  2234177 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 2234134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 2968937 - 2968980
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  2968937 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 2968980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 7291569 - 7291612
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||    
T  7291569 atcgatgtactctatcaattttaatgaatgaacatcgtttattt 7291612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 15665864 - 15665970
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatca 362  Q
    |||||||||||||||||||| ||| |||||| |||||||| |||||| | | | ||||| ||   ||||     |||||||| |||||||||||||||||    
T  15665864 ccgttttatgctattaacatggatgttgtgagtttgtttgcagattcgtcctttttgtttttggcgaat-----ttgcattgtatcgatgtactctatca 15665958  T
Q  363 atttgagtgaat 374  Q
    |||||| |||||    
T  15665959 atttgaatgaat 15665970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 24790877 - 24790834
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  24790877 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 24790834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 31202870 - 31202913
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  31202870 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 31202913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 375
Target Start/End: Original strand, 37720235 - 37720269
Alignment:
Q  341 cattgatcgatgtactctatcaatttgagtgaata 375  Q
    |||||||||||||||||||||||||||| ||||||    
T  37720235 cattgatcgatgtactctatcaatttgaatgaata 37720269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 9501990 - 9502030
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgttta 386  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  9501990 atcgatgtactctatcaatttgaatgaatgaatatcgttta 9502030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 17693448 - 17693412
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgttt 385  Q
    |||||||||||||||||||||||||| || |||||||    
T  17693448 gatgtactctatcaatttgagtgaatgaatatcgttt 17693412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 18190641 - 18190536
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaat 364  Q
    |||||||||||||||| || ||| |||||| ||||||   |||||||||| | ||||| ||   ||||| |||||||    ||||||||||||||| |||    
T  18190641 cgttttatgctattaatatggatgttgtgagtttgttcacagattcattctttttgtttttagcgaatttgtattgc----atcgatgtactctattaat 18190546  T
Q  365 ttgagtgaat 374  Q
    |||| |||||    
T  18190545 ttgaatgaat 18190536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 30026582 - 30026546
Alignment:
Q  353 tactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||| |||||||| |||||||||||    
T  30026582 tactctatcaatttgaatgaataaatatcgtttattt 30026546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 41362070 - 41362118
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    |||||||||||||||||||| ||| |||||| ||||||  |||||||||    
T  41362070 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcat 41362118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 41362158 - 41362198
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  41362158 gatgtactctatcaatttgaatgaatgaatatcgtttattt 41362198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 415 - 565
Target Start/End: Original strand, 15291492 - 15291642
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||||||||||||||| || |||||||||||||| ||| ||||  ||||| |||   |||||||||||||| ||||||  |||||||||| | |||||||    
T  15291492 ttcaagatatggaagttaagtttgacatgaccacgagacagaaggcaattttgggatgtttgcaagcagcacatgctcgggattttcttctagctatccc 15291591  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    |||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  15291592 aattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatcct 15291642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 415 - 553
Target Start/End: Complemental strand, 27337331 - 27337193
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||||||||||||||| || |||||||||||||| ||| ||||  || || |||   |||||||| || || |||||||||||||||||  | |||||||    
T  27337331 ttcaagatatggaagttaagtttgacatgaccactagacagaaggcagttttgggatgtttgcaaccaccacatgctcaagattttcttttagctatccc 27337232  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagta 553  Q
    |||| ||||||||||| | |||||||||||||| |||||    
T  27337231 aattgatgggttaggttagcatatgtcaccagttgagta 27337193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 472 - 554
Target Start/End: Complemental strand, 433873 - 433791
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtat 554  Q
    ||||||||||| || |||||||||||||||||| | ||||||||||| |||||||||| || |||||||||||| | ||||||    
T  433873 gtttgcaagcaccacatgctcaagattttcttctagctatcccaattgatgggttaggccagcatatgtcaccaattgagtat 433791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 488 - 547
Target Start/End: Original strand, 25662859 - 25662918
Alignment:
Q  488 tgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagt 547  Q
    ||||||||||||||||| | ||||||||||| ||||||| ||||| ||||||||||||||    
T  25662859 tgctcaagattttcttctagctatcccaattgatgggttgggtcagcatatgtcaccagt 25662918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 6635670 - 6635713
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  6635670 atcgatgtactctatcaatttgaatgaatgaaaatcgtttattt 6635713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 7771520 - 7771477
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||    
T  7771520 atcgatgtactatatcaatttgaatgaataaatatcgtttattt 7771477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 17331750 - 17331793
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  17331750 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 17331793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 23881815 - 23881772
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  23881815 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 23881772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 32309918 - 32309961
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  32309918 atcgatgtactctatcaatttgaatgaatcaatatcgtttattt 32309961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 34431486 - 34431529
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  34431486 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 34431529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 39531107 - 39531064
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  39531107 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 39531064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 565
Target Start/End: Original strand, 3113692 - 3113785
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    ||||| |||||||| |||||||||||||||| | | ||||||| ||| |||  |||||||| |||| ||||  ||| ||||||  |||||||||    
T  3113692 gtttggaagcagcacatgctcaagattttctcctagctatcccgattgatgatttaggtcagcataggtcattagtggagtatcgtactatcct 3113785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 6074527 - 6074421
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 363  Q
    ||||||| |||||||||||| ||| |||||| ||||||  ||||||||| | | ||||| ||   ||||| |||||||    ||||||||||||||||||    
T  6074527 ccgttttgtgctattaacatggatgttgtgagtttgttcatagattcatcctttttgtttttagcgaatttgtattgc----atcgatgtactctatcaa 6074432  T
Q  364 tttgagtgaat 374  Q
    | ||| |||||    
T  6074431 tgtgaatgaat 6074421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 586162 - 586202
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgttta 386  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  586162 atcgatgtactctatcaatttgaatgaatgaatatcgttta 586202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 40564947 - 40564911
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtt 301  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  40564947 cgttttatgctattaacatagatgttgtgagtttgtt 40564911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 42505109 - 42505069
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  42505109 gatgtactctatcaatttgaatgaatgaatatcgtttattt 42505069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 415 - 565
Target Start/End: Original strand, 9684884 - 9685034
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||  ||||| | |   |||||||||||||| || ||||||||||||||| | |||||||    
T  9684884 ttcaggatatggaagttaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagcacatactcaagattttcttctagctatccc 9684983  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
     ||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  9684984 tattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatcct 9685034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 565
Target Start/End: Original strand, 18744487 - 18744637
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||| ||||||||||| || ||||| |||||||| ||| ||||  ||||| | |   ||||||||||| || |||||||||| ||||||| | |||||||    
T  18744487 ttcaggatatggaagttaagtttgagatgaccacgagacagaaggcaatttttggatgtttgcaagcaccaaatgctcaagaatttcttctagctatccc 18744586  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
     ||| ||||||||||| | |||||||||||||| ||||||  |||||||||    
T  18744587 gattgatgggttaggttagcatatgtcaccagtggagtatcgtactatcct 18744637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 472 - 565
Target Start/End: Original strand, 20142266 - 20142359
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    |||||||||||||| ||||||| |||||||||| | ||||||| ||| |||||||| |||| ||||||||| |||| ||||||| |||||||||    
T  20142266 gtttgcaagcagcacatgctcaggattttcttctagctatcccgattgatgggttaagtcagcatatgtcaacagtggagtattgtactatcct 20142359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 472 - 565
Target Start/End: Original strand, 41867434 - 41867527
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    |||||||||||||| |||||||  ||||||||| | ||||||| ||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  41867434 gtttgcaagcagcacatgctcagaattttcttctagctatcccgattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatcct 41867527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 565
Target Start/End: Complemental strand, 17345270 - 17345126
Alignment:
Q  421 atatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaattta 520  Q
    |||||||||| || |||||||||||||| ||| | ||  ||||| | |   ||||||||| | || |||||||||||||||||| | ||||||||||| |    
T  17345270 atatggaagttaagtttgacatgaccaccagacaaaagacaatttttggatgtttgcaagaaccacatgctcaagattttcttctagctatcccaattga 17345171  T
Q  521 tgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    |||||||||||  |||||||||| ||| ||||||  |||||||||    
T  17345170 tgggttaggtcggcatatgtcactagtggagtatcgtactatcct 17345126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 472 - 565
Target Start/End: Complemental strand, 44686998 - 44686905
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    |||||||||||||| ||||| |||||||||||| | ||||| ||||| |||||||||||||  ||||||||||| | ||||||  |||||||||    
T  44686998 gtttgcaagcagcacatgcttaagattttcttctagctatctcaattgatgggttaggtcagtatatgtcaccaatggagtatcgtactatcct 44686905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 477 - 565
Target Start/End: Original strand, 4412597 - 4412685
Alignment:
Q  477 caagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    |||||| || ||||||| |||||||||| | ||||||| ||| ||| ||||||||| |||||||||||||| ||||||  |||||||||    
T  4412597 caagcaacacatgctcaggattttcttctagctatcccgattgatgagttaggtcagcatatgtcaccagtggagtatcgtactatcct 4412685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 472 - 546
Target Start/End: Complemental strand, 28225580 - 28225507
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccag 546  Q
    ||||||||| |||| |||||||||||||||||| | |||| |||||| ||||||||| ||| |||||||||||||    
T  28225580 gtttgcaagaagcacatgctcaagattttcttctagctat-ccaattgatgggttagatcagcatatgtcaccag 28225507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 5071161 - 5071055
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 363  Q
    |||||||||||||||||||| ||| |||||| |||||| | |||||||| | | ||||| ||   ||||| |||||||    ||||||||||||||||||    
T  5071161 ccgttttatgctattaacatggatgttgtgagtttgttcgcagattcatcctttttgttattagcgaatttgtattgc----atcgatgtactctatcaa 5071066  T
Q  364 tttgagtgaat 374  Q
    ||||| |||||    
T  5071065 tttgaatgaat 5071055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 563
Target Start/End: Original strand, 19161295 - 19161443
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||||||||||||||| || |||||||||| ||| ||| ||||  ||| | | |   |||||||||||  | ||||||| |||||||||| | ||||||     
T  19161295 ttcaagatatggaagttaagtttgacatgatcacgagacagaagacaactttaggatgtttgcaagcaatatatgctcaggattttcttctagctatcct 19161394  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 563  Q
     ||| || |||||||||| ||||||||| |||| ||||||  |||||||    
T  19161395 gattgataggttaggtcagcatatgtcatcagtggagtatcgtactatc 19161443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 10286710 - 10286670
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  10286710 gatgtactctatcaatttgaatgaataaatatcgtttattt 10286670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 3527408 - 3527451
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  3527408 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 3527451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 13878708 - 13878665
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  13878708 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 13878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 14018833 - 14018790
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  14018833 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 14018790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 16136500 - 16136543
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  16136500 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 16136543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 20560832 - 20560789
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  20560832 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 20560789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 25068263 - 25068306
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  25068263 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 25068306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 29543215 - 29543258
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  29543215 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 29543258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 33012470 - 33012513
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  33012470 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 33012513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 35333927 - 35333970
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  35333927 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 35333970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 44942708 - 44942751
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  44942708 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 44942751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 4615265 - 4615311
Alignment:
Q  267 ttttatgctattaacatagatattgtgaatttgtttgtagattcatt 313  Q
    ||||||| |||||| ||| |||||||||||||||| |||||||||||    
T  4615265 ttttatgttattaatataaatattgtgaatttgttcgtagattcatt 4615311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 386
Target Start/End: Original strand, 4739669 - 4739791
Alignment:
Q  266 gttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatcaa 363  Q
    |||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | ||| | |||| ||||||||||||||||||    
T  4739669 gttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggatttgtattgtatcgatgtactctatcaa 4739768  T
Q  364 tttgagtgaataaacatcgttta 386  Q
    ||||| ||||| || ||||||||    
T  4739769 tttgaatgaatgaatatcgttta 4739791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 11931195 - 11931245
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattc 314  Q
    |||||||||||||||||||| ||| |||||| |||||| | ||||||||||    
T  11931195 ccgttttatgctattaacatggatgttgtgagtttgttcgcagattcattc 11931245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 4604099 - 4604062
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtt 301  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  4604099 ccgttttatgctattaacatggatattgtgagtttgtt 4604062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 30933567 - 30933608
Alignment:
Q  260 ttttccgttttatgctattaacatagatattgtgaatttgtt 301  Q
    |||||||||||||||||||||||| ||| |||||| ||||||    
T  30933567 ttttccgttttatgctattaacatggatgttgtgagtttgtt 30933608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 32015675 - 32015716
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttat 387  Q
    ||||||||||||||||||||||| ||||| || |||||||||    
T  32015675 atcgatgtactctatcaatttgaatgaatgaatatcgtttat 32015716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 13548703 - 13548655
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    |||||||||||||||||||| |||| | ||| |||||| ||||||||||    
T  13548703 ccgttttatgctattaacatggatactctgagtttgttcgtagattcat 13548655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 17056260 - 17056212
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||||||    
T  17056260 ccgttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17056212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 17068707 - 17068659
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||||||    
T  17068707 ccgttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17068659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 17095277 - 17095229
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||||||    
T  17095277 ccgttttatgctattaacatgaatgttgtgagtttgttcgtagattcat 17095229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 25508906 - 25508870
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgttt 385  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25508906 gatgtactctatcaatttgaatgaataaatatcgttt 25508870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 31908513 - 31908473
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  31908513 gatgtactctatcaatttgaatgaatgaatatcgtttattt 31908473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 38535094 - 38535050
Alignment:
Q  257 acattttccgttttatgctattaacatagatattgtgaatttgtt 301  Q
    |||||| |||||||||||||||||||| ||| |||||| ||||||    
T  38535094 acatttgccgttttatgctattaacatggatgttgtgagtttgtt 38535050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 43696293 - 43696333
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  43696293 gatgtactctatcaatttgaatgaatgaatatcgtttattt 43696333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 420 - 565
Target Start/End: Original strand, 28040601 - 28040746
Alignment:
Q  420 gatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaattt 519  Q
    ||||||||| | || |||||||||||||| ||| ||||  ||||| | |   |||||||||||| | |||||||||||||||||| | ||||||| |||     
T  28040601 gatatggaaattaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagaacatgctcaagattttcttctagctatcccgattg 28040700  T
Q  520 atgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    || |||||||||| |||||||||||||| |||||| ||||||||||    
T  28040701 attggttaggtcaacatatgtcaccagtggagtatcatactatcct 28040746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 565
Target Start/End: Complemental strand, 19036065 - 19035915
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||| ||||||||||| || |||||||||||||| ||| | ||  ||||| | |   || ||||||||||| ||||||  |||||||||| | |||||||    
T  19036065 ttcaggatatggaagttaagtttgacatgaccacgagacaaaaggcaatttttggatgtctgcaagcagcacatgctcgggattttcttctagctatccc 19035966  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
     ||| ||| ||||||||| |||||||||||||| |||||| ||||||||||    
T  19035965 gattgatgagttaggtcaacatatgtcaccagtggagtatcatactatcct 19035915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 15585440 - 15585345
Alignment:
Q  473 tttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaa 568  Q
    |||||||||| || ||||||||||||| |||  | ||||||| ||| |||||||||| ||  ||||||||||||||||||||| ||||||| ||||    
T  15585440 tttgcaagcaacacatgctcaagatttacttttagctatccctattgatgggttaggccaaaatatgtcaccagtagagtattgtactatcatcaa 15585345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 415 - 565
Target Start/End: Complemental strand, 37200893 - 37200743
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||||||||||||||| ||||||||||||||||| |   | ||  ||||| |   | ||||||||| |||| |||||||  ||||||||  ||||||||     
T  37200893 ttcaagatatggaagttaaatttgacatgaccactacgcataagacaattttaaggtgtttgcaagtagcacatgctcatcattttcttttaactatcca 37200794  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
     ||  ||||||||||||| |||||||||| ||| |||||| ||||||||||    
T  37200793 tatggatgggttaggtcagcatatgtcactagtggagtatcatactatcct 37200743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 389
Target Start/End: Complemental strand, 28677926 - 28677795
Alignment:
Q  260 ttttccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactc 357  Q
    |||||||||||||||||||||||| ||| |||||| |||||| | |||||||| | | ||||| ||   ||||| | | ||| |||| ||||||||||||    
T  28677926 ttttccgttttatgctattaacatggatgttgtgagtttgttcgcagattcatcctttttgtttttagcgaatttggatttgtattgtatcgatgtactc 28677827  T
Q  358 tatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||| | ||| || |||||||||||    
T  28677826 tatcaatttgaataaatgaatatcgtttattt 28677795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 28666480 - 28666523
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  28666480 atcgatgtactctatcaatttgaatgaataaatatcgtttattt 28666523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 37822062 - 37822019
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  37822062 atcgatgtactctatcaatttgagtgaatgaatatcgtttattt 37822019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 389
Target Start/End: Original strand, 44517486 - 44517613
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 361  Q
    |||||||||||||||||||| ||| |||||| ||||||   ||| |||| | | ||||| ||  |||||| | ||| | |||| ||||||||||||||||    
T  44517486 ccgttttatgctattaacatggatgttgtgagtttgttcacagagtcatcctttttgtttttagtgaatttggatttgtattgtatcgatgtactctatc 44517585  T
Q  362 aatttgagtgaataaacatcgtttattt 389  Q
    ||||||| ||||| || |||||||||||    
T  44517586 aatttgaatgaatgaatatcgtttattt 44517613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 13691554 - 13691448
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 363  Q
    |||||||||||||||||||| ||| |||||| ||||||  ||||||||| | | ||||| ||    |||| |||||||    ||||||||||||||||||    
T  13691554 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcatcctttttgtttttagcaaatttgtattgc----atcgatgtactctatcaa 13691459  T
Q  364 tttgagtgaat 374  Q
    ||||| |||||    
T  13691458 tttgaatgaat 13691448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 4882076 - 4882033
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  4882076 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 4882033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 15390951 - 15390908
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||| |||| |||||||| |||||||||||    
T  15390951 atcgatgtactctatcaagttgaatgaataaatatcgtttattt 15390908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 25032802 - 25032759
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  25032802 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 25032759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 29205690 - 29205733
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  29205690 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 29205733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 389
Target Start/End: Original strand, 8893684 - 8893736
Alignment:
Q  338 ttgcattg-atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||| |||||||    
T  8893684 ttgcattgtatcgatgtactctatcaatttgaatgaatgaatatcatttattt 8893736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 34659363 - 34659311
Alignment:
Q  338 ttgcattg-atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||| |||||||    
T  34659363 ttgcattgtatcgatgtactctatcaatttgaatgaatgaatatcatttattt 34659311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 472 - 553
Target Start/End: Complemental strand, 5827835 - 5827754
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagta 553  Q
    |||||||||||||| |||||||| ||||||||| | ||||||||||| ||||||||||||| |||||||||||||| |||||    
T  5827835 gtttgcaagcagcacatgctcaaaattttcttctagctatcccaattgatgggttaggtcagcatatgtcaccagtggagta 5827754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 42603562 - 42603435
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgc-attg-atcgatgtactctatc 361  Q
    |||||||||||||||||||||||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | |||   |||| ||||||||||||||||    
T  42603562 ccgttttatgctattaacatagatgttgtgagtttgttcacagattcatccgttttgtttttagcgaatttgaatttatattgtatcgatgtactctatc 42603463  T
Q  362 aatttgagtgaataaacatcgtttattt 389  Q
    ||||||| ||||| ||||||||||||||    
T  42603462 aatttgaatgaatgaacatcgtttattt 42603435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 21329089 - 21328983
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattgatcgatgtactctatcaa 363  Q
    |||||||||||||||||||| ||| |||||||||||||   |||||||| | | ||||| ||   ||||| |||||||    ||||||||||||||||||    
T  21329089 ccgttttatgctattaacatggatgttgtgaatttgttcacagattcatcctttttgtttttagcgaatttgtattgc----atcgatgtactctatcaa 21328994  T
Q  364 tttgagtgaat 374  Q
    ||||| |||||    
T  21328993 tttgaatgaat 21328983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 563
Target Start/End: Complemental strand, 24528171 - 24528080
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 563  Q
    |||||||||||  | ||||||| |||||||||| | |||||   ||| |||||||||| || |||||||||||||| |||||| ||||||||    
T  24528171 gtttgcaagcataatatgctcaggattttcttctagctatcatgattgatgggttaggacaacatatgtcaccagtggagtatcatactatc 24528080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 27535767 - 27535892
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 362  Q
    ||||||||||||||||||| ||| |||||| ||||||   | |||||| | | ||||| || | ||||| ||||| | |||| |||||||||||||||||    
T  27535767 cgttttatgctattaacatggatgttgtgagtttgttac-atattcatccttgttgtttttgacgaatttgtatttgtattgtatcgatgtactctatca 27535865  T
Q  363 atttgagtgaataaacatcgtttattt 389  Q
    |||| | |||||||| |||||||||||    
T  27535866 atttaaatgaataaatatcgtttattt 27535892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 389
Target Start/End: Complemental strand, 4621160 - 4621036
Alignment:
Q  267 ttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatcaat 364  Q
    |||||||||||||||||  || |||||| ||||||   |||||||| | | ||||| || | ||||| | ||| | |||| |||||||||||||||||||    
T  4621160 ttttatgctattaacatgaatgttgtgagtttgttaacagattcatcctttttgtttttaacgaatttggatttgaattgtatcgatgtactctatcaat 4621061  T
Q  365 ttgagtgaataaacatcgtttattt 389  Q
    |||| ||||| || |||||||||||    
T  4621060 ttgaatgaatgaatatcgtttattt 4621036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 11833440 - 11833483
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  11833440 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 11833483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 21991084 - 21991127
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  21991084 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 21991127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 44482577 - 44482534
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  44482577 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 44482534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 48643525 - 48643482
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  48643525 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 48643482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 22751725 - 22751762
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtt 301  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  22751725 ccgttttatgttattaacatagatgttgtgaatttgtt 22751762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 2623017 - 2623057
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  2623017 gatgtactctatcaatttgaatgaatgaatatcgtttattt 2623057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 9137817 - 9137857
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  9137817 gatgtactctatcaatttgaatgaataaatatcttttattt 9137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 22747208 - 22747168
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgttta 386  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  22747208 atcgatgtactctatcaatttgaatgaatcaatatcgttta 22747168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 24533595 - 24533555
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| |||||||| ||| |||||||    
T  24533595 gatgtactctatcaatttgattgaataaatatcttttattt 24533555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 25287025 - 25286989
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgttt 385  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25287025 gatgtactctatcaatttgaatgaataaatatcgttt 25286989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 37593422 - 37593458
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtt 301  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  37593422 cgttttatgctattaacatggatattgtgagtttgtt 37593458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 45482474 - 45482514
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgttta 386  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  45482474 atcgatgtactctatcaatttgaatgaattaatatcgttta 45482514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 553
Target Start/End: Original strand, 7200043 - 7200180
Alignment:
Q  416 tcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccca 515  Q
    |||||||||||||||||| ||||| |||||||||||| |||||  | |||| | | ||| ||||| || | ||||||| |||||||||| | ||||| ||    
T  7200043 tcaagatatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgttggcaagaagaacatgctcaggattttcttctagctatctca 7200142  T
Q  516 atttatgggttaggtcatcatatgtcaccagtagagta 553  Q
    ||| ||||||||| ||| ||||||||||  ||||||||    
T  7200143 attgatgggttagatcaacatatgtcacacgtagagta 7200180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 553
Target Start/End: Complemental strand, 34305135 - 34304997
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||||||||||||||| || |||||||||||| ||||| ||||   | || | |   ||||| |||||||| |||||||||||||| ||| |  ||||||    
T  34305135 ttcaagatatggaagttaagtttgacatgaccgcaagacagaaggaagtttttggatgtttggaagcagcacatgctcaagattttattctaggtatccc 34305036  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagta 553  Q
    |||| |||||||| |||| |||||||||||||| |||||    
T  34305035 aattgatgggttatgtcagcatatgtcaccagtggagta 34304997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 415 - 572
Target Start/End: Original strand, 8374767 - 8374924
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    |||| |||||||||||||||||||||||||||||  || |||||  | || |   | |||||||| || || |||||||| ||||||||| | ||||||     
T  8374767 ttcaggatatggaagtgaaatttgacatgaccacgcgacagaaagtagtttttcggtgtttgcaaacaacacatgctcaatattttcttctagctatcct 8374866  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaaatat 572  Q
     ||| |||||||| | || |||||||||||| ||||||||  ||||||||||| ||||    
T  8374867 tattgatgggttaagccaacatatgtcaccaatagagtatcgtactatcctcatatat 8374924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 8693454 - 8693327
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 361  Q
    |||||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||  |||||| | ||| | |||| ||||||||||||||||    
T  8693454 ccgttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttagtgaatttggatttgtattgtatcgatgtactctatc 8693355  T
Q  362 aatttgagtgaataaacatcgtttattt 389  Q
    ||||||| |||||||| |||||||||||    
T  8693354 aatttgaatgaataaatatcgtttattt 8693327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 416 - 538
Target Start/End: Original strand, 29337556 - 29337678
Alignment:
Q  416 tcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccca 515  Q
    ||||||||||||||| || |||||||||||| | ||| ||||  |  || ||| | |||||||||||||| ||||||| |||||||||| | ||||||      
T  29337556 tcaagatatggaagttaagtttgacatgacctctagacagaaggccgttttggggtgtttgcaagcagcacatgctcaggattttcttctagctatcctg 29337655  T
Q  516 atttatgggttaggtcatcatat 538  Q
    ||| ||||||||||||| |||||    
T  29337656 attgatgggttaggtcagcatat 29337678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 2488461 - 2488587
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 362  Q
    ||||||||||||||||||||||| |||| | |||||| | | ||| || | | ||||| || |||| || | ||| | |||| |||||||||||||||||    
T  2488461 cgttttatgctattaacatagatgttgtaagtttgttcgcatatttatcctttttgtttttaatgactttggatttgtattgtatcgatgtactctatca 2488560  T
Q  363 atttgagtgaataaacatcgtttattt 389  Q
    |||||| |||||||| |||||||||||    
T  2488561 atttgaatgaataaatatcgtttattt 2488587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 4660767 - 4660893
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactctatca 362  Q
    ||||||||||||||||||| |||  ||||| ||||||  ||||||||| | | ||||| ||  |||||| | | ||| |||| |||||||||||||||||    
T  4660767 cgttttatgctattaacatggatgatgtgagtttgttcatagattcatcctttttgtttttagtgaatttggaattgtattgtatcgatgtactctatca 4660866  T
Q  363 atttgagtgaataaacatcgtttattt 389  Q
    |||||| ||||| || |||||||||||    
T  4660867 atttgaatgaatgaatatcgtttattt 4660893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 8644552 - 8644672
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatcaa 363  Q
    ||||||||||||||||||| ||| |||||| |||||| | ||||||||   ||||||| ||  ||||||     ||||||| ||||||||||||||||||    
T  8644552 cgttttatgctattaacatggatgttgtgagtttgttcgcagattcatctttcttgtttttagtgaatt-----tgcattgtatcgatgtactctatcaa 8644646  T
Q  364 tttgagtgaataaacatcgtttattt 389  Q
    ||||| ||||| || ||| |||||||    
T  8644647 tttgaatgaattaatatcatttattt 8644672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 19402635 - 19402508
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 361  Q
    |||||||||||||||||||| |||| ||||| ||||||   | |||||| | | ||||| || | ||||| | ||| | |||| ||||||||||||||||    
T  19402635 ccgttttatgctattaacatggatactgtgagtttgttcacatattcatcctttttgtttttaacgaatttggatttgtattgtatcgatgtactctatc 19402536  T
Q  362 aatttgagtgaataaacatcgtttattt 389  Q
    ||||||| ||||| || |||||||||||    
T  19402535 aatttgaatgaatgaatatcgtttattt 19402508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 504
Target Start/End: Complemental strand, 32120566 - 32120477
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttc 504  Q
    |||||||||||||||| || |||||||||||||||||| ||||  ||||| | |   ||||||||| || | ||||||| ||||||||||    
T  32120566 ttcaagatatggaagttaagtttgacatgaccacaagacagaagacaattataggatgtttgcaagtaggacatgctcatgattttcttc 32120477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 5417015 - 5416967
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    |||||||||||||||||||| ||| |||||| |||||| ||||||||||    
T  5417015 ccgttttatgctattaacatggatgttgtgagtttgttcgtagattcat 5416967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 5146348 - 5146391
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  5146348 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 5146391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 12654017 - 12653974
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  12654017 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 12653974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 15589824 - 15589781
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  15589824 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 15589781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 23654671 - 23654714
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  23654671 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 23654714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 30813479 - 30813522
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  30813479 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 30813522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 31804615 - 31804658
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||| | |||||||| |||||||||||    
T  31804615 atcgatgtactctatcaatttaaatgaataaatatcgtttattt 31804658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 6419640 - 6419603
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgttt 302  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  6419640 cgttttatgctattaacatggatactgtgaatttgttt 6419603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 581
Target Start/End: Original strand, 23910816 - 23910925
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcctcaaata 571  Q
    ||||||||||| || ||| | |  ||||| ||| ||||||||||||| ||| ||||||| | |||||||||||||| || |||| |||| || | |||||    
T  23910816 gtttgcaagcaacacatgtttagaatttttttctaactatcccaattgatgagttaggttagcatatgtcaccagtggaatattgtactctctttaaata 23910915  T
Q  572 tggccctatg 581  Q
    | ||| ||||    
T  23910916 tcgccttatg 23910925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 565
Target Start/End: Original strand, 45232 - 45288
Alignment:
Q  509 tatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    |||||| ||| ||||||||||||| ||||||||| | || |||||| ||||||||||    
T  45232 tatcccgattgatgggttaggtcagcatatgtcatctgtggagtatcatactatcct 45288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 11321381 - 11321345
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgttt 385  Q
    |||||||||||||||||||| |||||||| |||||||    
T  11321381 gatgtactctatcaatttgaatgaataaatatcgttt 11321345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 374
Target Start/End: Original strand, 19760189 - 19760217
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaat 374  Q
    |||||||||||||||||||||||||||||    
T  19760189 atcgatgtactctatcaatttgagtgaat 19760217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 415 - 563
Target Start/End: Complemental strand, 53171136 - 53170988
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    ||||| |||||||||| || |||||||| ||||| ||| ||||| ||||| | |   |||||||||||||| ||||||| |||||||||| | ||||||     
T  53171136 ttcaaaatatggaagttaagtttgacataaccacgagaaagaaaacaatttttggatgtttgcaagcagcacatgctcaggattttcttctagctatcct 53171037  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 563  Q
    |||| ||||||||| ||| ||||| ||| |||| ||||||  |||||||    
T  53171036 aattgatgggttagttcagcatatatcatcagtggagtatcgtactatc 53170988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 27091047 - 27091173
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 362  Q
    ||||||||||||||||||||||| |||| | |||||| | | ||| || | | ||||| || |||| || | ||| | |||| |||||||||||||||||    
T  27091047 cgttttatgctattaacatagatgttgtaagtttgttcgcatatttatcctttttgtttttaatgactttggatttgtattgtatcgatgtactctatca 27091146  T
Q  363 atttgagtgaataaacatcgtttattt 389  Q
    |||||| |||||||| |||||||||||    
T  27091147 atttgaatgaataaatatcgtttattt 27091173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 464
Target Start/End: Original strand, 23809168 - 23809217
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaatt 464  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  23809168 ttcaagatatggaagtgaaatttgacatgaccataaggcagaaatcaatt 23809217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 565
Target Start/End: Complemental strand, 16958115 - 16958023
Alignment:
Q  473 tttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    ||||||||||||| |||||| ||||||||||| | ||||||  ||| |||||| ||| || |||||||||||||| || || | |||||||||    
T  16958115 tttgcaagcagcacatgctctagattttcttctagctatcctcattgatgggtaaggccagcatatgtcaccagtggattactgtactatcct 16958023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 31522280 - 31522412
Alignment:
Q  260 ttttccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactc 357  Q
    |||||||||||||||||||||||  ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | | ||| |||| ||||||||||||    
T  31522280 ttttccgttttatgctattaacaaggatgttgtgagtttgttcacagattcatcctttttgtttttagcgaatttggacttgtattgtatcgatgtactc 31522379  T
Q  358 tatcaatttgagtgaataaacatcgtttatttc 390  Q
    ||||||||||| ||||| || ||||||||||||    
T  31522380 tatcaatttgaatgaatgaatatcgtttatttc 31522412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 7083520 - 7083477
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  7083520 atcgatgtactctatcaatttgagtgaatgaatatcgtttattt 7083477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 8712930 - 8712973
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  8712930 atcgatgtactctatcaatttgaatgaataaatatcgtttattt 8712973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 572
Target Start/End: Complemental strand, 24222506 - 24222372
Alignment:
Q  438 gacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcata 537  Q
    ||||||||||||||| |||||  |||| | | | ||||||||||| || |||||||| ||||||||  ||||||| | ||| ||||||||||    || |    
T  24222506 gacatgaccacaagagagaaagtaattgttgggtgtttgcaagcatcacatgctcaaaattttcttttaactatctctattgatgggttaggctgacaca 24222407  T
Q  538 tgtcaccagtagagtattatactatcctcaaatat 572  Q
    ||||||| ||||||||   |||||| |||||||||    
T  24222406 tgtcacccgtagagtaccgtactattctcaaatat 24222372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 46268005 - 46268130
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatca 362  Q
    ||||||||||||||||||| ||| |||||| ||||||   | |||||| | | ||||| || | ||||| ||||| | |||| |||||||||||||||||    
T  46268005 cgttttatgctattaacatggatgttgtgagtttgttac-atattcatccttgttgtttttgacgaatttgtatttgtattgtatcgatgtactctatca 46268103  T
Q  363 atttgagtgaataaacatcgtttattt 389  Q
    |||| | |||||||| |||||||||||    
T  46268104 atttaaatgaataaatatcgtttattt 46268130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 554
Target Start/End: Original strand, 56461640 - 56461722
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtat 554  Q
    |||||||| ||||| |||||||||||||| ||| | |||||  |||| || |||||||||||||||| |||||| | ||||||    
T  56461640 gtttgcaaacagcacatgctcaagatttttttctagctatcataattgattggttaggtcatcatatatcaccaatggagtat 56461722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 487 - 563
Target Start/End: Complemental strand, 32335417 - 32335341
Alignment:
Q  487 atgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatc 563  Q
    ||||||| |||||||||| | ||||||| ||| |||| ||||||||||||||||||  ||| |||||  ||||||||    
T  32335417 atgctcatgattttcttctagctatccctattgatggattaggtcatcatatgtcattagtggagtaccatactatc 32335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 7084364 - 7084407
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  7084364 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 7084407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 13965965 - 13966008
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  13965965 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 13966008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 14346832 - 14346875
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  14346832 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 14346875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 24826061 - 24826104
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  24826061 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 24826104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 38434999 - 38435042
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  38434999 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 38435042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 42197975 - 42198018
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  42197975 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 42198018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 45350769 - 45350726
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  45350769 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 45350726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 45360248 - 45360205
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  45360248 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 45360205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 7860992 - 7860942
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattc 314  Q
    |||||||||||||||||||||||| |||||| ||| |||  ||||||||||    
T  7860992 ccgttttatgctattaacatagatgttgtgagtttatttacagattcattc 7860942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 553
Target Start/End: Complemental strand, 25707084 - 25707002
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactat-cccaatttatgggttaggtcatcatatgtcaccagtagagta 553  Q
    |||||||||||||| ||||| | |||||||||| | |||  ||| ||| ||||||||||||| ||||||||||  ||||||||    
T  25707084 gtttgcaagcagcacatgctgaggattttcttctagctacacccgattgatgggttaggtcagcatatgtcacttgtagagta 25707002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 46775648 - 46775610
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttg 303  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  46775648 cgttttatgctattaacatagatgttgtgagtttgtttg 46775610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 6882366 - 6882406
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgttta 386  Q
    ||||||||||||||||||||||| ||||| || ||||||||    
T  6882366 atcgatgtactctatcaatttgaatgaatgaatatcgttta 6882406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 41837739 - 41837779
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| |||||||  |||||||||||    
T  41837739 gatgtactctatcaatttgaatgaataattatcgtttattt 41837779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 472 - 554
Target Start/End: Complemental strand, 53786289 - 53786207
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtat 554  Q
    ||||||||||| || |||||||||||||||||| | |||| |  ||| ||||||||||||| |||||||||||||| ||||||    
T  53786289 gtttgcaagcaccacatgctcaagattttcttctagctattctgattgatgggttaggtcagcatatgtcaccagtggagtat 53786207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 389
Target Start/End: Original strand, 2192416 - 2192543
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 361  Q
    |||||||||||||||||||| ||| |||||||||||||   |||||||| | | || || ||   ||||| | ||| | |||| ||||||||||||||||    
T  2192416 ccgttttatgctattaacatggatgttgtgaatttgttcacagattcatcctttttatttttagcgaatttgaatttgtattgtatcgatgtactctatc 2192515  T
Q  362 aatttgagtgaataaacatcgtttattt 389  Q
    ||||||| ||||| || |||||||||||    
T  2192516 aatttgaatgaatgaatatcgtttattt 2192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 389
Target Start/End: Complemental strand, 13701793 - 13701666
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 361  Q
    |||||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | ||| | |||| ||||||||||||||||    
T  13701793 ccgttttatgctattaacatggatgttgtgagtttgttcaaagattcatcctttttgtttttagcgaatttgaatttgtattgtatcgatgtactctatc 13701694  T
Q  362 aatttgagtgaataaacatcgtttattt 389  Q
    ||||||| ||||| || |||||||||||    
T  13701693 aatttgaatgaatgaatatcgtttattt 13701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 105837 - 105712
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatcaa 363  Q
    ||||||||||||||||||| |||  ||||| |||||| | |||||||| | | ||||||||  ||| || |  ||| |||| ||| ||||||||||||||    
T  105837 cgttttatgctattaacatggatgatgtgagtttgttcggagattcatcctttttgttcttagtgactttgatttgtattgtatcaatgtactctatcaa 105738  T
Q  364 tttgagtgaataaacatcgtttattt 389  Q
    ||||| ||||| || || ||||||||    
T  105737 tttgaatgaatgaatattgtttattt 105712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 4019922 - 4020042
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtattgcattg-atcgatgtactctatcaa 363  Q
    ||||||||||||||||||| ||| |||||| |||||||| ||||||||   | ||||| |||  ||||     |||||||| ||||||| ||||||||||    
T  4019922 cgttttatgctattaacatggatgttgtgagtttgtttgcagattcatcatttttgttttttgcgaat-----ttgcattgtatcgatgcactctatcaa 4020016  T
Q  364 tttgagtgaataaacatcgtttattt 389  Q
    ||||| ||||| || ||| |||||||    
T  4020017 tttgaatgaatgaatatcatttattt 4020042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 565
Target Start/End: Complemental strand, 35236709 - 35236616
Alignment:
Q  472 gtttgcaagcagcagatgctcaagattttcttcaaactatcccaatttatgggttaggtcatcatatgtcaccagtagagtattatactatcct 565  Q
    ||||||||| || | ||| |||||||||||||||| || |||   || |||| |||||||| |||||||||||||| |||||  ||||||||||    
T  35236709 gtttgcaagtagtatatgatcaagattttcttcaagctgtcctggttgatggattaggtcagcatatgtcaccagtggagtaccatactatcct 35236616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 4082042 - 4082094
Alignment:
Q  260 ttttccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    |||||||||||||||||||||||| ||| |||||| |||||||  ||||||||    
T  4082042 ttttccgttttatgctattaacatggatgttgtgagtttgtttacagattcat 4082094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 1074601 - 1074558
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  1074601 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 1074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 11819506 - 11819549
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  11819506 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 11819549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 21803932 - 21803975
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||    
T  21803932 atcgatgtactctatcaatttgaatgaataaatatcttttattt 21803975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 24483403 - 24483360
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  24483403 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 24483360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 40012979 - 40012936
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||| |||||||||||||||| |||||||| |||||||||||    
T  40012979 atcgatatactctatcaatttgaatgaataaatatcgtttattt 40012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 48401514 - 48401557
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  48401514 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 48401557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 554
Target Start/End: Complemental strand, 49018590 - 49018451
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgctcaagattttcttcaaactatccc 514  Q
    ||||||||||| |||| || |||||| ||||||| ||| | ||  ||||| | |   |||||||||||| | ||||||| |||||||||| | ||||||     
T  49018590 ttcaagatatgtaagttaagtttgacgtgaccacgagacaaaagacaattttaggatgtttgcaagcagtacatgctcatgattttcttctagctatcct 49018491  T
Q  515 aatttatgggttaggtcatcatatgtcaccagtagagtat 554  Q
     ||| ||||||||||||| |  ||||||| ||| ||||||    
T  49018490 gattgatgggttaggtcagcgcatgtcacaagtggagtat 49018451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 49627811 - 49627768
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  49627811 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 49627768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 55090406 - 55090363
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  55090406 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 55090363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 6903105 - 6903147
Alignment:
Q  270 tatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    |||||||||||| |||||||||||| |||||||||| ||||||    
T  6903105 tatgctattaacttagatattgtgagtttgtttgtaaattcat 6903147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 48855300 - 48855342
Alignment:
Q  347 tcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||||| ||||| || |||||||||||    
T  48855300 tcgatgtactctatcaatttgaatgaattaatatcgtttattt 48855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 53962443 - 53962489
Alignment:
Q  266 gttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    ||||||| || ||||||| ||| ||||||||||||||||||||||||    
T  53962443 gttttatactgttaacatggatgttgtgaatttgtttgtagattcat 53962489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 44431475 - 44431438
Alignment:
Q  421 atatggaagtgaaatttgacatgaccacaagatagaaa 458  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  44431475 atatgaaagtaaaatttgacatgaccacaagatagaaa 44431438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 51990670 - 51990629
Alignment:
Q  260 ttttccgttttatgctattaacatagatattgtgaatttgtt 301  Q
    |||||||||||||||||||||||| ||| |||||| ||||||    
T  51990670 ttttccgttttatgctattaacattgatgttgtgagtttgtt 51990629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 54706437 - 54706396
Alignment:
Q  348 cgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||| ||||| || |||||||||||    
T  54706437 cgatgtactctatcaatttgaatgaatgaatatcgtttattt 54706396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 14585887 - 14585927
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  14585887 gatgtactctatcaatttgaatgaatgaatatcgtttattt 14585927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 19645615 - 19645655
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  19645615 gatgtactctatcaatttgaatgaatgaatatcgtttattt 19645655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 28995100 - 28995052
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    |||||||||||||||||||| ||| |||||| ||||||  |||||||||    
T  28995100 ccgttttatgctattaacatggatgttgtgagtttgttcatagattcat 28995052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 50981170 - 50981130
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  50981170 gatgtactctatcaatttgaatgaatgaatatcgtttattt 50981130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 51084304 - 51084264
Alignment:
Q  349 gatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  51084304 gatgtactctatcaatttgaatgaatgaatatcgtttattt 51084264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 20932 - 21058
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgta-ttgcattg-atcgatgtactctatca 362  Q
    ||||||||||||||||||| |||  ||||| |||||||  |||||||| | | ||||| ||  |||||| | | ||| |||| |||||||||||||||||    
T  20932 cgttttatgctattaacatggatgatgtgagtttgtttaaagattcatcctttttgtttttagtgaatttggaattgtattggatcgatgtactctatca 21031  T
Q  363 atttgagtgaataaacatcgtttattt 389  Q
    |||||| ||||| || |||||||||||    
T  21032 atttgaatgaatgaaaatcgtttattt 21058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 542
Target Start/End: Complemental strand, 20363 - 20232
Alignment:
Q  415 ttcaagatatggaagtgaaatttgacatgaccacaagatagaaatcaattctggagggtttgcaagcagcagatgc----tcaagattttcttcaaacta 510  Q
    ||||||||||| |||| || |||||||||||||| ||| ||||  || || | ||| ||||||| ||| || ||||    ||| |||||||||  | |||    
T  20363 ttcaagatatgaaagttaagtttgacatgaccactagacagaagacagttttagagtgtttgcatgcaacacatgcatgctcaggattttcttgtagcta 20264  T
Q  511 tcccaatttatgggttaggtcatcatatgtca 542  Q
    |||||||| ||||||||||||| |||||||||    
T  20263 tcccaattgatgggttaggtcaacatatgtca 20232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 386
Target Start/End: Complemental strand, 3850 - 3726
Alignment:
Q  264 ccgttttatgctattaacatagatattgtgaatttgtttgtagattcattcatcttgttctttatgaattcgtatt-gcattg-atcgatgtactctatc 361  Q
    |||||||||||||||||||| ||| |||||| ||||||   |||||||| | | ||||| ||   ||||| | ||| | |||| ||||||||||||||||    
T  3850 ccgttttatgctattaacatggatgttgtgagtttgttcacagattcatcctttttgtttttaccgaatttggatttgtattgtatcgatgtactctatc 3751  T
Q  362 aatttgagtgaataaacatcgttta 386  Q
    ||||||| ||||| || ||||||||    
T  3750 aatttgaatgaatgaatatcgttta 3726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 1099 - 1146
Alignment:
Q  265 cgttttatgctattaacatagatattgtgaatttgtttgtagattcat 312  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||    
T  1099 cgttttatgctattaacatagataccgtgagtttgttggtagattcat 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 389
Target Start/End: Original strand, 2117 - 2156
Alignment:
Q  350 atgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  2117 atgtactctatcaatttgagtgaatgaatatcgtttattt 2156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 3317 - 3360
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  3317 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 35497 - 35540
Alignment:
Q  346 atcgatgtactctatcaatttgagtgaataaacatcgtttattt 389  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  35497 atcgatgtactctatcaatttgaatgaatgaatatcgtttattt 35540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 35996 - 36044
Alignment:
Q  266 gttttatgctattaacatagatattgtgaatttgtttgtagattcattc 314  Q
    |||||||| ||||||||| ||| ||||||||||||||| | ||||||||    
T  35996 gttttatgttattaacatggatgttgtgaatttgtttgcatattcattc 36044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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