View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_40 (Length: 252)
Name: NF17962_low_40
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 37602138 - 37601898
Alignment:
| Q |
3 |
atgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataacnnn |
102 |
Q |
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| T |
37602138 |
atgaagcagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataacaaa |
37602039 |
T |
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| Q |
103 |
nnnnnng-gcaagcatgagctcaaagaaaataacaccagataaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctc |
201 |
Q |
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| T |
37602038 |
aaaaaaaagcaagcatgagctcaaagaaaataacaccaggtaaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctc |
37601939 |
T |
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| Q |
202 |
tttaaatctaacaatattgggatgcttcaatgacctatgat |
242 |
Q |
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| T |
37601938 |
tttaaatctaacaatattgggatgcttcaatgacctatgat |
37601898 |
T |
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Back To:
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 39410729 - 39410683
Alignment:
| Q |
196 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatgat |
242 |
Q |
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| T |
39410729 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatgat |
39410683 |
T |
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