View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_42 (Length: 250)
Name: NF17962_low_42
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_42 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 12553113 - 12552873
Alignment:
| Q |
10 |
ataatactattaaatttgtgattgcttactctaaaagctctttccagtaggaaccaccacttgattcatcgtcaaggaacttctcccaatcatcaaagat |
109 |
Q |
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| T |
12553113 |
ataatactattaaatttgtgattgcttactctaaaagctctttccagtaggaaccaccacttgattcatcgtcaaggaacttctcccaatcatcaaagat |
12553014 |
T |
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| Q |
110 |
tgcatttgaaggtgagtgatcgatggacatttgagctttgttgcggtcattttcgatttgattgaagattccagttctaggagaggaagcaaccaaagca |
209 |
Q |
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| T |
12553013 |
tgcatttgaaggtgagtgatcgatggacatttgagctttgttgcggtcattttcgatttgattgaagattccaattctaggagaggaagcaaccaaagca |
12552914 |
T |
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| Q |
210 |
ggaagtagattttcttcttgatttacacatgaaatgcttct |
250 |
Q |
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| T |
12552913 |
ggaagtagattttcttcttgatttacacatgaaatgcttct |
12552873 |
T |
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