View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_44 (Length: 249)
Name: NF17962_low_44
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 12552854 - 12552622
Alignment:
| Q |
1 |
atcttgtaaacttgattcaccttttgaaatatcctgctttgaagactcactttgtccataagagtataagctagggttcatagcatattcttcaccacca |
100 |
Q |
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| T |
12552854 |
atcttgtaaacttgattcaccttttgaaatatcctgctttgaagactcactttgtccataagagtataaactagggttcatagcatattcttcaccacca |
12552755 |
T |
|
| Q |
101 |
ctcaaacctaatggctcgttagtttgaattgtgtttgttccattcaaaaacaaattgaatggattaaagctagggttaatattccctaaggggttataag |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12552754 |
ctcaaacctaatggctcattagtttgaattgtgtttgttccattcaaaaacaaattgaatggattaaagctagggttaatattccctaaggggttataag |
12552655 |
T |
|
| Q |
201 |
gataatttcccatgttaccaaatgaattatttg |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
12552654 |
gataatttcccatgttaccaaatgaattatttg |
12552622 |
T |
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