View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_48 (Length: 247)
Name: NF17962_low_48
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_48 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 27775354 - 27775123
Alignment:
| Q |
16 |
cattattctatcgggcaaatgttatttcagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgatt |
115 |
Q |
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| T |
27775354 |
cattattctatcgggcaaatgttattccagcatatgagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgatt |
27775255 |
T |
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| Q |
116 |
agagataataattgtgatggatatagatgcaattaattctaaaataacaaactaaactttcaagacaaaacataaaaggtgggagacaatacatgtttaa |
215 |
Q |
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| T |
27775254 |
agagataataattgtgatggatatagatgcaattaattctaaaataacaaactaaactttaaagacaaaacataaaaggtgggagacaatacatgtttaa |
27775155 |
T |
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| Q |
216 |
gctgcagaagaattgctgcttttttgccttcc |
247 |
Q |
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| T |
27775154 |
gctgcagaagaattgttgcttttttgccttcc |
27775123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 27764453 - 27764322
Alignment:
| Q |
51 |
gagctcaactgaataggctaaaagattatttcagcatcttgattatttagatgttaagtatgattagagataataattgtgatggatatagatgcaatta |
150 |
Q |
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| T |
27764453 |
gagctcaacggaataggctaaaagattatttcagcatcttgattatttagatgttaagtaagattagagatattaatagtgatgaattgagatgcaatca |
27764354 |
T |
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| Q |
151 |
attctaaaataacaaactaaactttcaagaca |
182 |
Q |
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| T |
27764353 |
attctaaaataccaaaccaaactttcaagaca |
27764322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 27799814 - 27799689
Alignment:
| Q |
70 |
aaaagattatttcagcatcttgattatttagatgt-----taagtatgattagagataataattgtgatggatatagatgcaattaattctaaaataaca |
164 |
Q |
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| T |
27799814 |
aaaagattagtttagcatcttgattatttagatggagtaattagtatgattagagatgataacagagatagactaagatgcaattaattctaaaatacca |
27799715 |
T |
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| Q |
165 |
aactaaactttcaagacaaaacataa |
190 |
Q |
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| T |
27799714 |
aactaaactttcaagagaaaacataa |
27799689 |
T |
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