View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17962_low_5 (Length: 523)
Name: NF17962_low_5
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_5 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 39321987 - 39322387
Alignment:
| Q |
12 |
atcatcaaacttctggcaggatgaaaatgtcgaataacactggatcgaattttcttcataacaccctttactttcttcctgaaccctttcagccaatgac |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39321987 |
atcatcaaatttctggcaggatgaaaatgtcgaataacactggatcgaattttcttcataacaccctttactttcttcctgaaccctttcagccaatgac |
39322086 |
T |
|
| Q |
112 |
ttggcagcaattttgcgaggctgagtgcacacaattgtctcatcagccccaatgccagaatccgcgagaaactgtactatctgagtactcttcccagaac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39322087 |
ttggcagcaattttgcgaggctgagtgcacacaattgtctcatcagccccaatgccagaatccgcgagaaactgtactatctgagtactcttcccagaac |
39322186 |
T |
|
| Q |
212 |
cagtctctccaatcaacactgttatctgcacatatactgctcgtatgaacaaccgtaaaaatctaaatagcaacataatcaatagcatcgacaggtnnnn |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39322187 |
cagtctctccaatcaacactgttatctgcacatatactgctcgtaagaacaaccgcaaaaatataaatagcaacataatcaatagcatcgacaggcaaaa |
39322286 |
T |
|
| Q |
312 |
nnnnnnnnnnnnnntatctcccacaacttacaaatactaaagtcggaaactaatattgcttcacaagatcacataatcgaattacaacaacaaatacaac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39322287 |
acaaaaacaaaaaatatctcccacaacttacaaatactaaagtcggaaactaatattgcttcacaagatcacataatcgaattacaacaacaaatacaac |
39322386 |
T |
|
| Q |
412 |
c |
412 |
Q |
| |
|
| |
|
|
| T |
39322387 |
c |
39322387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 3877670 - 3877457
Alignment:
| Q |
31 |
gatgaaaatgtcgaataacactggatcgaattttcttcataacaccctttactttcttcctgaaccctttcagccaatgacttggcagcaattttgcgag |
130 |
Q |
| |
|
|||||||||| |||||||||| ||| ||| | ||||||||||| || |||||||||| | ||||||||||||||||| || |||||||| |||||| |
|
|
| T |
3877670 |
gatgaaaatgaagaataacacttgattgaactgtcttcataacatccaccactttcttcccggaccctttcagccaatgattttgcagcaatcctgcgag |
3877571 |
T |
|
| Q |
131 |
gctgagtgcacacaattgtctcatcagccccaatgccagaatccgcgagaaactgtactatctgagtactcttcccagaaccagtctctccaatcaacac |
230 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| || ||||| || |||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3877570 |
gctgagtgcacacaattgactcattggccccaacacccgaatcagcaagaaactgcactaattgagtactcttcccagaacctgtctctccaatcaacac |
3877471 |
T |
|
| Q |
231 |
tgttatctgcacat |
244 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
3877470 |
tgttatctgtacat |
3877457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 450 - 508
Target Start/End: Original strand, 39322432 - 39322490
Alignment:
| Q |
450 |
tacctgttgatgatgaatttgttgaagaatctccctccggtaagcataaatgggtaatc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39322432 |
tacctgttgatgatgaatttgttgaagaatctccctccggtaagcataaatgggtaatc |
39322490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 21576 - 21362
Alignment:
| Q |
31 |
gatgaaaatgtcgaataacactggatcgaattttcttcataacaccctttactttcttcctgaaccctttcagccaatgacttggcagcaattttgcgag |
130 |
Q |
| |
|
|||||||||| |||||||||| ||| ||| | ||||||||||| || |||||||||| | ||||||||||||||||| || |||||||| |||||| |
|
|
| T |
21576 |
gatgaaaatgaagaataacacttgattgaactgtcttcataacatccaccactttcttcccggaccctttcagccaatgattttgcagcaatcctgcgag |
21477 |
T |
|
| Q |
131 |
gctgagtgcacacaattgtctcatcagccccaatgccagaatccgcgagaaactgtactatctgagtactcttcccagaaccagtctctccaatcaacac |
230 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||| ||||| || |||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21476 |
gctgagtgcacacaattgactcattggccccaacgcccgaatcagcaagaaactgcactaattgagtactcttcccagaacctgtctctccaatcaacac |
21377 |
T |
|
| Q |
231 |
tgttatctgcacata |
245 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
21376 |
tgttatctgtacata |
21362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University