View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_53 (Length: 238)
Name: NF17962_low_53
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47652471 - 47652709
Alignment:
| Q |
1 |
aatgttacacaagaccgtttgttaataaaaaagttcaagatgaatattaatctcaaccaaaggaaggttgt--------------aaagaaagaagcatg |
86 |
Q |
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| T |
47652471 |
aatgttacacaagaccgtttgttaataaaaaagttcaagatgaatatttatcgcaaccaaaggaaggttgtaggaaaataattgtaaagaaagaagcatg |
47652570 |
T |
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| Q |
87 |
agtaaaacaagtagaagtgaccaaagcaatgtgaaaaatgtaccgcaaagtacaccatgaaaagataaaagaagagtgtgtag--atatagtaagggaaa |
184 |
Q |
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|||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47652571 |
agtaaaacaagtagaaatgaccaaagcaatgtcaaatatgtaccgcaaagtacaccatgaaaagataaaagaagagtgtgtagatatatagtaagggaaa |
47652670 |
T |
|
| Q |
185 |
gtggggaaagagtacaggttggcaaccatgtgaaaaagt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
47652671 |
gtggggaaagagtacaggttggcaaccatgtgaaaaagt |
47652709 |
T |
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