View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_54 (Length: 238)
Name: NF17962_low_54
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 642400 - 642179
Alignment:
| Q |
1 |
tcttccataaatggcttctacaacatgcttaaccaaggactcaatgacctccaccaaaccttcatctctcataatttcatgtctttccaattcctttcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
642400 |
tcttccataaatggcttctacaacatgcttaaccaaggactcattgacctccaccaaaccttcatctctcataatttcatgtctttccaattcctttcac |
642301 |
T |
|
| Q |
101 |
aagttatctcatctctacaatccttccattcccaactcacccttttggtccgcaagcttaggttacctgttggaggaaaatggcttgatgaatacatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
642300 |
aagttatctcatctctacaatccttccattcccaactcacccttttggtccgcaagcttaggttacctgttggaggaaaatggcttgatgaatacatgga |
642201 |
T |
|
| Q |
201 |
tgaaagctcaagactttgggat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
642200 |
tgaaagctcaagactttgggat |
642179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 36867390 - 36867233
Alignment:
| Q |
65 |
tctctcataatttcatgtctttccaattcctttcacaagttatctcatctctacaatccttccattcccaactcacccttttggtccgcaagcttaggtt |
164 |
Q |
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|||| ||||| ||||||||| |||||||| |||| | || | ||||||||||||||||| ||||| || | || |||||||| | || ||| | || |
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| T |
36867390 |
tctcacataacttcatgtctatccaattcatttctgaggtgctttcatctctacaatcctttcattctcagttaacacttttggtacaaaacctttgttt |
36867291 |
T |
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| Q |
165 |
acctgttggaggaaaatggcttgatgaatacatggatgaaagctcaagactttgggat |
222 |
Q |
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| T |
36867290 |
accaattggagggaaatggttggatgaatacatggatgaaagctcaaggctttgggat |
36867233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 209
Target Start/End: Complemental strand, 25323508 - 25323477
Alignment:
| Q |
178 |
aaatggcttgatgaatacatggatgaaagctc |
209 |
Q |
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| T |
25323508 |
aaatggcttgatgaatacatggatgaaagctc |
25323477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 33137845 - 33137817
Alignment:
| Q |
178 |
aaatggcttgatgaatacatggatgaaag |
206 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33137845 |
aaatggcttgatgaatacatggatgaaag |
33137817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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