View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_55 (Length: 237)

Name: NF17962_low_55
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_55
NF17962_low_55
[»] chr3 (12 HSPs)
chr3 (35-221)||(32589803-32589995)
chr3 (153-221)||(54017806-54017874)
chr3 (147-221)||(3135438-3135512)
chr3 (172-221)||(22304669-22304718)
chr3 (142-210)||(25755505-25755573)
chr3 (161-221)||(54018196-54018256)
chr3 (162-221)||(22303954-22304013)
chr3 (162-221)||(37990638-37990697)
chr3 (184-221)||(15772954-15772991)
chr3 (172-221)||(37990986-37991035)
chr3 (172-221)||(39934964-39935013)
chr3 (173-221)||(32462910-32462958)
[»] chr5 (8 HSPs)
chr5 (143-221)||(3295325-3295403)
chr5 (143-219)||(3294995-3295071)
chr5 (147-218)||(27502020-27502091)
chr5 (150-221)||(6500550-6500621)
chr5 (156-209)||(11416970-11417023)
chr5 (172-221)||(36492226-36492275)
chr5 (162-221)||(40296314-40296373)
chr5 (172-221)||(24489215-24489264)
[»] chr8 (14 HSPs)
chr8 (162-221)||(8919143-8919202)
chr8 (151-221)||(3669787-3669857)
chr8 (172-221)||(34834976-34835025)
chr8 (150-221)||(9483174-9483245)
chr8 (163-221)||(5915967-5916025)
chr8 (147-221)||(20870557-20870631)
chr8 (172-221)||(3670160-3670209)
chr8 (172-221)||(30441185-30441234)
chr8 (172-221)||(40579278-40579327)
chr8 (153-221)||(6876852-6876920)
chr8 (153-221)||(34835309-34835377)
chr8 (153-221)||(34835575-34835643)
chr8 (153-221)||(34835841-34835909)
chr8 (153-221)||(40518171-40518239)
[»] chr7 (8 HSPs)
chr7 (151-221)||(37533352-37533422)
chr7 (147-221)||(1085600-1085674)
chr7 (151-221)||(45433341-45433411)
chr7 (173-221)||(19122831-19122879)
chr7 (153-221)||(37167881-37167949)
chr7 (150-221)||(7517680-7517751)
chr7 (172-221)||(28300577-28300626)
chr7 (152-221)||(30244370-30244439)
[»] chr6 (14 HSPs)
chr6 (147-221)||(2578427-2578501)
chr6 (147-221)||(2578819-2578893)
chr6 (143-221)||(2843655-2843733)
chr6 (149-221)||(29518603-29518675)
chr6 (149-221)||(29519020-29519092)
chr6 (149-221)||(32741279-32741351)
chr6 (162-221)||(1846848-1846907)
chr6 (143-221)||(16455007-16455085)
chr6 (161-221)||(3409760-3409820)
chr6 (143-197)||(2975029-2975083)
chr6 (153-203)||(14748332-14748382)
chr6 (151-221)||(16454675-16454745)
chr6 (173-221)||(2579119-2579167)
chr6 (173-221)||(3409359-3409407)
[»] chr2 (13 HSPs)
chr2 (151-221)||(6421485-6421555)
chr2 (172-221)||(15511504-15511553)
chr2 (172-221)||(6422210-6422259)
chr2 (153-221)||(3672801-3672869)
chr2 (161-221)||(40733617-40733677)
chr2 (154-221)||(36178596-36178663)
chr2 (147-221)||(6421831-6421905)
chr2 (151-221)||(36178159-36178229)
chr2 (152-221)||(37106024-37106093)
chr2 (173-221)||(1769992-1770040)
chr2 (153-221)||(3673168-3673236)
chr2 (161-221)||(35580722-35580782)
chr2 (161-221)||(40733982-40734042)
[»] chr4 (15 HSPs)
chr4 (153-221)||(25483436-25483504)
chr4 (150-221)||(36629337-36629408)
chr4 (150-221)||(39404118-39404189)
chr4 (162-221)||(54343005-54343064)
chr4 (147-221)||(39792842-39792916)
chr4 (143-221)||(23817657-23817737)
chr4 (173-221)||(54109012-54109060)
chr4 (172-210)||(18879917-18879955)
chr4 (143-221)||(44620759-44620837)
chr4 (164-221)||(45489331-45489388)
chr4 (147-203)||(11702281-11702337)
chr4 (147-211)||(19895406-19895469)
chr4 (173-213)||(39404506-39404546)
chr4 (173-213)||(50459829-50459869)
chr4 (153-221)||(54017583-54017651)
[»] chr1 (8 HSPs)
chr1 (162-221)||(41157091-41157150)
chr1 (162-222)||(41142472-41142532)
chr1 (171-221)||(37555829-37555879)
chr1 (171-221)||(37556211-37556261)
chr1 (172-221)||(41157475-41157524)
chr1 (153-222)||(44290814-44290883)
chr1 (172-221)||(48588497-48588546)
chr1 (147-203)||(31767145-31767201)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 32589995 - 32589803
Alignment:
Q  35 aagcttgttcacctccatatgaagaacatcagtttcaaacaccccaccactcttttagccaaccatttatttcacatgcatttatgtagcagcaattatg 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  32589995 aagcttgttcacctccatatgaagaacatcagtttcaaacaccccaccactcttttagccaaccatttatttcccatgcatttatgtagcagcaattacg 32589896  T
Q  135 tccatgaa------tggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||      |||||||||| ||||||||||||||||  |||||||||  ||||||||||||||||||||| ||||||| |||||||||    
T  32589895 tccatgaatgttgttggatcatgaagggagcgagggggaccgtccacatcgagcctagaacaaccacacaagcaagagagacatcgcactctt 32589803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 54017806 - 54017874
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||||||||  |||||||||| |||||||||||||||||| || ||||||||| |||||||    
T  54017806 ggggagccagggggaccgcccacatcgaagctagaacaaccacacaagtaagagagacaccacactctt 54017874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 3135438 - 3135512
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||| |||  |||||||||  |||||||||  ||||||||||| ||||||||||||||||||| |||||||    
T  3135438 tcatgaggagagtcagggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactctt 3135512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 22304718 - 22304669
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||| |||||||||||| ||||||||| ||||||||| |||||||    
T  22304718 ccacatcgagactagaacaaccgcacaagcaagagagacaccacactctt 22304669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 25755573 - 25755505
Alignment:
Q  142 atggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagac 210  Q
    |||| ||||||||||||   ||||||||| |||||||||  ||||||||||| ||||||||| ||||||    
T  25755573 atgggtcatgaggggagttcgggggaccatccacatcgaggctagaacaaccgcacaagcaagagagac 25755505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 54018196 - 54018256
Alignment:
Q  161 agggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  |||||||||  ||||||||||||||||||||  ||||||||| |||||||    
T  54018196 agggggaccgcccacatcgaggctagaacaaccacacaagcatgagagacaccacactctt 54018256  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 22303954 - 22304013
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| | |||||||||  ||||||||||||| ||||||| ||||||||| |||||||    
T  22303954 gggggacaatccacatcgaggctagaacaaccactcaagcaagagagacaccacactctt 22304013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 37990638 - 37990697
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  |||||||||  ||||||||| ||||||||||| ||||||||| |||||||    
T  37990638 gggggaccgtccacatcgaggctagaacaatcacacaagcaagagagacaccacactctt 37990697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 15772991 - 15772954
Alignment:
Q  184 tagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  15772991 tagaacaaccacacaagcaagagagacaccacactctt 15772954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 37990986 - 37991035
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  |||||||||||||| |||||| ||||||||| |||||||    
T  37990986 ccacatcgaggctagaacaaccacataagcaagagagacaccacactctt 37991035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 39934964 - 39935013
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||||||||||||| ||||||| | |||||||    
T  39934964 ccacatcgaggctagaacaaccacacaagcaagagagacatcacactctt 39935013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 32462910 - 32462958
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  32462910 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 32462958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 3295325 - 3295403
Alignment:
Q  143 tggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||||||||| ||||||||||  |||||||||  ||||||||||||||||||||| ||||||| | |||||||    
T  3295325 tggatcatgaggggagtgagggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaacacactctt 3295403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 3294995 - 3295071
Alignment:
Q  143 tggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactc 219  Q
    ||||||||||||||||||||||||||   |||||||||  ||| ||||||||||||| ||| ||||||||| |||||    
T  3294995 tggatcatgaggggagcgagggggactgtccacatcgaggctacaacaaccacacaaccaagagagacaccacactc 3295071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 27502020 - 27502091
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcact 218  Q
    ||||||||||||| |||||||||  |||||||||   |||||||||||||||||||| ||||||||| ||||    
T  27502020 tcatgaggggagctagggggaccgtccacatcgaggatagaacaaccacacaagcaagagagacaccacact 27502091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 6500621 - 6500550
Alignment:
Q  150 tgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||  ||||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  6500621 tgaggggagcctgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 6500550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 11416970 - 11417023
Alignment:
Q  156 gagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagaga 209  Q
    ||||||||||||||| |||||||||| ||||||||| | ||||||||| |||||    
T  11416970 gagcgagggggaccatccacatcgaagctagaacaatcccacaagcaagagaga 11417023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 36492226 - 36492275
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  36492226 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactctt 36492275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 40296314 - 40296373
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  40296314 gggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 40296373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 24489215 - 24489264
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||| |||||||||||| |||||| ||||||||| || |||||||    
T  24489215 ccacatcgagactagaacaaccgcacaagtaaaagagacgccacactctt 24489264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 8919143 - 8919202
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  8919143 gggggaccgtccacatcgaagctagaacaaccacacaagcaaaagagacaccacactctt 8919202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 3669857 - 3669787
Alignment:
Q  151 gaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||| |||||||||| |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  3669857 gaggggagctagggggaccatccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 3669787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 34835025 - 34834976
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  34835025 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactctt 34834976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 9483174 - 9483245
Alignment:
Q  150 tgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||| | ||| |||  |||||||||  ||||||||||| ||| ||||||||||||||| |||||||    
T  9483174 tgaggggagctatgggaaccgtccacatcgaggctagaacaaccgcacgagcaaaagagacaccacactctt 9483245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 5916025 - 5915967
Alignment:
Q  163 ggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  5916025 ggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 5915967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 20870557 - 20870631
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||||| ||| |||||  ||| ||| |   |||||||||||||||||||| ||||||||| |||||||    
T  20870557 tcatgaggggagccaggaggaccgtccatatcaaggttagaacaaccacacaagcaagagagacaccacactctt 20870631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 3670209 - 3670160
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  3670209 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 3670160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 30441234 - 30441185
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  30441234 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 30441185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 40579278 - 40579327
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  40579278 ccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 40579327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 6876852 - 6876920
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||  ||||||||  |||||||||  ||||||||||||||||| ||| ||| ||||| |||||||    
T  6876852 ggggagctcgggggaccgtccacatcgaggctagaacaaccacacaaacaagagaaacaccacactctt 6876920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 34835377 - 34835309
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||||||||  | |||||||  |||||| |||||||||||||| || |||||| |||||||    
T  34835377 ggggagccagggggaccgtctacatcgaggctagaataaccacacaagcaagagtgacaccacactctt 34835309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 34835643 - 34835575
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||||||||  | |||||||  |||||| |||||||||||||| || |||||| |||||||    
T  34835643 ggggagccagggggaccgtctacatcgaggctagaataaccacacaagcaagagtgacaccacactctt 34835575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 34835909 - 34835841
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||||||||  | |||||||  |||||| |||||||||||||| || |||||| |||||||    
T  34835909 ggggagccagggggaccgtctacatcgaggctagaataaccacacaagcaagagtgacaccacactctt 34835841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 40518239 - 40518171
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||  ||||||||  ||||||| |  ||||||||||||||||||||| |||||| || |||||||    
T  40518239 ggggagctcgggggaccgtccacatcaaggctagaacaaccacacaagcaagagagacgccacactctt 40518171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 37533352 - 37533422
Alignment:
Q  151 gaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||| ||||||||  |||||||||  ||||||||||| ||||||||||||||||||| |||||||    
T  37533352 gaggggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactctt 37533422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 1085600 - 1085674
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||||| |||||||||  |||||||||  |||||||||||||||||| || |||||| || |||||||    
T  1085600 tcatgaggggagccagggggaccgtccacatcgaggctagaacaaccacacaagtaagagagacgccacactctt 1085674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 45433411 - 45433341
Alignment:
Q  151 gaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||| |||||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  45433411 gaggggagccagggggaccgaccacatcgaggctagaacaaccccacaagcaagagagacaccacactctt 45433341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 19122879 - 19122831
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||| |||||||||||||||||||||| | ||||||| |||||||    
T  19122879 cacatcgagactagaacaaccacacaagcaagatagacaccacactctt 19122831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 37167949 - 37167881
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||| || |||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  37167949 ggggagcgcggaggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 37167881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 7517751 - 7517680
Alignment:
Q  150 tgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||| | |||||||| |||||||||  ||||||||||||||||||  | | ||||||| |||||||    
T  7517751 tgaggggagccaaggggaccacccacatcgaggctagaacaaccacacaagtgagacagacaccacactctt 7517680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 28300577 - 28300626
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  |||||| |||||||||||||| ||||||||| |||||||    
T  28300577 ccacatcgaggctagaataaccacacaagcaagagagacaccacactctt 28300626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 30244439 - 30244370
Alignment:
Q  152 aggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  ||||||||| |||||||||  || |||||||||||||||  | ||||||||| |||||||    
T  30244439 aggggagctcgggggaccatccacatcgaggcttgaacaaccacacaagtgagagagacaccacactctt 30244370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 2578427 - 2578501
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||| || |||||||||  |||||||||  ||||||||||| ||||||||||||||||||| |||||||    
T  2578427 tcatgaggggggctagggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactctt 2578501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 2578819 - 2578893
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||||||  ||||||||  |||||||||    ||||||||||||||||||||||||||||| |||||||    
T  2578819 tcatgaggggagcctgggggaccgtccacatcgaggtcagaacaaccacacaagcaaaagagacaccacactctt 2578893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 2843733 - 2843655
Alignment:
Q  143 tggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||||||||  |||||||||  |||||||||  ||||||||||||| ||||||| ||||| ||| |||||||    
T  2843733 tggatcatgaggggagttagggggaccgtccacatcgaggctagaacaaccactcaagcaagagagataccacactctt 2843655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 29518675 - 29518603
Alignment:
Q  149 atgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||| |||||| ||||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  29518675 atgagaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 29518603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 29519092 - 29519020
Alignment:
Q  149 atgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||| |||||| ||||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  29519092 atgagaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 29519020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 32741351 - 32741279
Alignment:
Q  149 atgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||| |||||| ||||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  32741351 atgagaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 32741279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 1846907 - 1846848
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  |||||||||  ||||||||||| ||||||||||||||||||| |||||||    
T  1846907 gggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactctt 1846848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 16455085 - 16455007
Alignment:
Q  143 tggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||| |||||||||||  ||||||||  |||||||||  ||||||||||| ||||||||| |||||| || |||||||    
T  16455085 tggattatgaggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactctt 16455007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 3409820 - 3409760
Alignment:
Q  161 agggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  |||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  3409820 agggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 3409760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 2975083 - 2975029
Alignment:
Q  143 tggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacac 197  Q
    ||||||||||| |||||| | |||||| ||||||||||  |||||||||||||||    
T  2975083 tggatcatgagaggagcgcgtgggacctgccacatcgaggctagaacaaccacac 2975029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 14748332 - 14748382
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaa 203  Q
    |||||||| ||||||||  |||||||||  |||||||||||||||||||||    
T  14748332 ggggagcgcgggggaccgtccacatcgaggctagaacaaccacacaagcaa 14748382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 16454745 - 16454675
Alignment:
Q  151 gaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||  |||||||||  ||||||||||| ||||||||| |||||| || |||||||    
T  16454745 gaggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactctt 16454675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2579119 - 2579167
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  ||||||||||||||| ||||| ||||||||| |||||||    
T  2579119 cacatcgaggctagaacaaccacacgagcaagagagacaccacactctt 2579167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 3409407 - 3409359
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  3409407 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactctt 3409359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 6421555 - 6421485
Alignment:
Q  151 gaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||  ||||||||| |||||||||||| ||||||||| ||||||||| |||||||    
T  6421555 gaggggagctcgggggaccgtccacatcgagactagaacaaccgcacaagcaagagagacaccacactctt 6421485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 15511504 - 15511553
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  15511504 ccacatcgagactagaacaaccacacaagcaagagagacaccacactctt 15511553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 6422259 - 6422210
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  6422259 ccacatcgaggctagaacaaccacacaagcaagagagacaccacactctt 6422210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 3672869 - 3672801
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| ||||| |||  ||||||||| ||||||||||||||||||  || ||||||||| |||||||    
T  3672869 ggggagccaggggaaccgtccacatcgagactagaacaaccacacaattaagagagacaccacactctt 3672801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 40733677 - 40733617
Alignment:
Q  161 agggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||| ||||||||| ||| |||| ||||||||||| | ||||||||| |||||||    
T  40733677 agggggaccatccacatcgagacttgaactaccacacaagcgagagagacaccacactctt 40733617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 36178596 - 36178663
Alignment:
Q  154 gggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||||| |  |||||| ||  ||||||||||||||||||||| ||||||||| |||||||    
T  36178596 gggagcgcgggggatcgtccacatagaggctagaacaaccacacaagcaagagagacaccacactctt 36178663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 6421905 - 6421831
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||||||  ||||||||  |||||||||  | ||||||||||||||||  | ||||||||| |||||||    
T  6421905 tcatgaggggagctcgggggaccgtccacatcgaggccagaacaaccacacaagttagagagacaccacactctt 6421831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 36178159 - 36178229
Alignment:
Q  151 gaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||| ||||||||  | |||||||  ||| ||||||||||||||||| |||| |||| |||||||    
T  36178159 gaggggagcgcgggggaccgtctacatcgaggctataacaaccacacaagcaagagaggcaccacactctt 36178229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 37106093 - 37106024
Alignment:
Q  152 aggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  ||||||||  |||||||||  |||||||||||  |||||||| ||||||||| |||||||    
T  37106093 aggggagctcgggggaccgtccacatcgaggctagaacaaccgtacaagcaagagagacaccacactctt 37106024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 1770040 - 1769992
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  ||||||||||| ||||||||| ||||||||| |||||||    
T  1770040 cacatcgaggctagaacaacctcacaagcaagagagacaccacactctt 1769992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 3673236 - 3673168
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||||||||  |||||||||  ||||||||||||||| || || ||||||| | |||||||    
T  3673236 ggggagccagggggaccgtccacatcgaggctagaacaaccacactagtaagagagacatcacactctt 3673168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 35580722 - 35580782
Alignment:
Q  161 agggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  |||||||||  ||||||||||| ||||| ||| |||||| ||||||||||    
T  35580722 agggggaccgtccacatcgaggctagaacaaccccacaaacaagagagacgccgcactctt 35580782  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 40734042 - 40733982
Alignment:
Q  161 agggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||| ||| |||||||||||||||| | | ||||||| |||||||    
T  40734042 agggggaccgtccacatcgagacttgaacaaccacacaagcgagacagacaccacactctt 40733982  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 25483504 - 25483436
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||| ||||  |||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  25483504 ggggagccagggagaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactctt 25483436  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 36629408 - 36629337
Alignment:
Q  150 tgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||  | ||||||  |||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  36629408 tgaggggagcatgtgggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactctt 36629337  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 39404189 - 39404118
Alignment:
Q  150 tgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||  ||||||||  |||||||||  ||||||||||||||||||||| |||||| || |||||||    
T  39404189 tgaggggagctcgggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactctt 39404118  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 54343005 - 54343064
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||| |||||||||  ||||||||||||| ||||||| ||||||||| |||||||    
T  54343005 gggggaccatccacatcgaggctagaacaaccactcaagcaagagagacaccacactctt 54343064  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 39792842 - 39792916
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||||||   | |||||  |||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  39792842 tcatgaggggagctcagaggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactctt 39792916  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 23817657 - 23817737
Alignment:
Q  143 tggatcat-gaggggagcga-gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||| ||||||||| | ||||||||  |||||||||  ||||||||||||||| ||||| ||||||||| |||||||    
T  23817657 tggatcatcgaggggagctatgggggaccgtccacatcgaggctagaacaaccacactagcaagagagacaccacactctt 23817737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 54109060 - 54109012
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||| ||||||||||| ||||||||| ||||||||| |||||||    
T  54109060 cacatcgaagctagaacaaccgcacaagcaagagagacaccacactctt 54109012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 18879955 - 18879917
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagac 210  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  18879955 ccacatcgaagctagaacaaccacacaaccaaaagagac 18879917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 44620837 - 44620759
Alignment:
Q  143 tggatcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||||||||||  ||||||||  |||||||||   || ||||||| ||||||||| ||||| ||| |||||||    
T  44620837 tggatcatgaggggagcttgggggaccgtccacatcgaggatataacaaccgcacaagcaagagagaaaccacactctt 44620759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 45489331 - 45489388
Alignment:
Q  164 gggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||||||||  ||||||||| ||||| ||||||||||||| | |||||||    
T  45489331 gggaccatccacatcgaggctagaacaatcacactagcaaaagagacatcacactctt 45489388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 11702281 - 11702337
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaa 203  Q
    ||||||||||||||||||||||    ||||||||  ||||||||||| |||||||||    
T  11702281 tcatgaggggagcgagggggactgttcacatcgaggctagaacaaccgcacaagcaa 11702337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 19895469 - 19895406
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagaca 211  Q
    ||||| ||||||| | |||||||| |||||||||  ||||||||||| ||||||||| |||||||    
T  19895469 tcatggggggagctatggggacca-ccacatcgaggctagaacaaccgcacaagcaagagagaca 19895406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 39404546 - 39404506
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacacc 213  Q
    ||||||||  ||||||||||||||||||||| |||||||||    
T  39404546 cacatcgaggctagaacaaccacacaagcaagagagacacc 39404506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 50459869 - 50459829
Alignment:
Q  173 cacatcgaaactagaacaaccacacaagcaaaagagacacc 213  Q
    ||||||||  ||||||||||||||||||||| |||||||||    
T  50459869 cacatcgaggctagaacaaccacacaagcaagagagacacc 50459829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 54017583 - 54017651
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||| |||| ||||  |||||||||  |||||||||||||| |||||| ||||||| | |||||||    
T  54017583 ggggagctagggagaccgtccacatcgaggctagaacaaccacataagcaagagagacatcacactctt 54017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 41157150 - 41157091
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||  |||||||||  ||||||||||||||||||||| ||||||||| |||||||    
T  41157150 gggggaccgcccacatcgaggctagaacaaccacacaagcaatagagacaccacactctt 41157091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 41142532 - 41142472
Alignment:
Q  162 gggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactcttt 222  Q
    ||||||||  |||||||||  ||||||||||||||||||||| |||||| || ||||||||    
T  41142532 gggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactcttt 41142472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 37555879 - 37555829
Alignment:
Q  171 gccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||  || |||||||||||||||||| ||||||||| |||||||    
T  37555879 gccacatcgaggcttgaacaaccacacaagcaagagagacaccacactctt 37555829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 37556261 - 37556211
Alignment:
Q  171 gccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    ||||||||||  || |||||||||||||||||| ||||||||| |||||||    
T  37556261 gccacatcgaggcttgaacaaccacacaagcaagagagacaccacactctt 37556211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 41157524 - 41157475
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||||||||||||| | ||||||| |||||||    
T  41157524 ccacatcgaggctagaacaaccacacaagcaagacagacaccacactctt 41157475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 44290814 - 44290883
Alignment:
Q  153 ggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactcttt 222  Q
    |||||||  ||||||||  |||||||||  ||||||||||| ||||||||| ||| ||||| ||||||||    
T  44290814 ggggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagatacaccacactcttt 44290883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 48588497 - 48588546
Alignment:
Q  172 ccacatcgaaactagaacaaccacacaagcaaaagagacaccgcactctt 221  Q
    |||||||||  ||||||||||| |||||| || |||||||||||||||||    
T  48588497 ccacatcgaggctagaacaaccgcacaagtaagagagacaccgcactctt 48588546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 31767145 - 31767201
Alignment:
Q  147 tcatgaggggagcgagggggaccagccacatcgaaactagaacaaccacacaagcaa 203  Q
    ||||||||| |||  ||||||||  |||||||||  |||||||||||||||||||||    
T  31767145 tcatgagggaagcttgggggaccgtccacatcgagtctagaacaaccacacaagcaa 31767201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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