View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_57 (Length: 236)
Name: NF17962_low_57
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_57 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 27 - 220
Target Start/End: Complemental strand, 3593436 - 3593243
Alignment:
| Q |
27 |
tttctatttatttatttagatagatacacagtagaataaaattcggatactgatcgaatctttccagttcttttctgtagtataatatttgtagtacaat |
126 |
Q |
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| T |
3593436 |
tttctatttatttatttagatagatacacagtagaataaattt-ggatactgattgaatctttccagttcttttctgtagtataatatttgtagtacaat |
3593338 |
T |
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| Q |
127 |
actt-agtatagtaaatttaacatggcttagaaaaagttagaaattagccgtttcgcaggtttctttgatgctttaatatatggttcctgttttg |
220 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
3593337 |
actttagtatagtaaatttaacatggcttagaaaaagttagaaattagccctttcgaaggtttctttgatgctttaatatacggttcctgttttg |
3593243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 3588776 - 3588690
Alignment:
| Q |
27 |
tttctatttatttatttagatagatacacagtagaataaaattcggatactgatcgaatctttccagttcttttctgtagtataata |
113 |
Q |
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| T |
3588776 |
tttctatttatttatttagatagatacacagtagaataaaattcggatactgatcgaatctttctagttcttttatgtagtataata |
3588690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 18181840 - 18181745
Alignment:
| Q |
35 |
tatttatttagatagatacacagtagaataaaattcggatactgatcgaatctttccagttcttttctgtagtataatatttgtagtacaatactt |
130 |
Q |
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| T |
18181840 |
tatttatttagatagatatacaatagaataaaattcggatactgatcgaatctttccagttcttttttgtagtatactatttatagtaaaatactt |
18181745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 1114795 - 1114878
Alignment:
| Q |
27 |
tttctatttatttatttagatagatacacagtagaataaaattcggatactgatcgaatctttccagttcttttctgtagtata |
110 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1114795 |
tttctatttatttatttagatagatatacaatagaataaaattcggatactgatcgaatctttccagttcttttttgtagtata |
1114878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 10853 - 10757
Alignment:
| Q |
35 |
tatttatttagatagatacacagtagaataaaa-ttcggatactgatcgaatctttccagttcttttctgtagtataatatttgtagtacaatactt |
130 |
Q |
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|||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||| |
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| T |
10853 |
tatttatttagatagatatacaatagaataaaaattcggatactgatcgaatctttccagttcttttttgtagtatactatttatagtaaaatactt |
10757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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