View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17962_low_7 (Length: 485)
Name: NF17962_low_7
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17962_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 16956648 - 16956190
Alignment:
| Q |
18 |
gttttctctctcattgtcttttttggtcaatctttatttcctgttaacattctataatacttcatatttatttattttctaagaactagatagacattat |
117 |
Q |
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| T |
16956648 |
gttttctctctcattgtcttttttggtcaatctttatttcctgttaacattctataatacttcatatttatttattttctaagaactagatagacattat |
16956549 |
T |
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| Q |
118 |
agttcaaatgaaaattaaaaataatgccaaactccaaaatatccatcttcattattaaatactagcaagataaccctgttgacaattaaccagcaaatgc |
217 |
Q |
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| T |
16956548 |
agttcaaatgaaaattaaaaataatgtcaaactccaaaatatccatcttgattgttaaatactagcaagataaccctgttaacaattaaccagcaaatgc |
16956449 |
T |
|
| Q |
218 |
atgcaacaaaacataccaatcttttcactttttgttgtgagttacccatagcaatagcaattcgaactccggaaacctgtgtaggagtatcaccatgtta |
317 |
Q |
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| T |
16956448 |
atgcaaaaaaacataccaatcttttcactttttgttgtgagttactcatagcaataacactttgaactccagaaacctgtgtaggagtatcaccatgtta |
16956349 |
T |
|
| Q |
318 |
accaca---gatttcttctttccttcccatcatgtttataaattgtaatatgcaatagaaaaattacactttcaattccattatccaggacaggaacaca |
414 |
Q |
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| T |
16956348 |
accacatagtatttcttctttcctacccatcatgtttataaattgta--atgtcatagaaaaattacactttcaattccattatccaggacaggaacaca |
16956251 |
T |
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| Q |
415 |
gttcaatttgaacaagctaactagtgtagccaagtaacttgtaaaataataggcatctgtg |
475 |
Q |
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| T |
16956250 |
gttcaatttgaacaagctaactagtgtagccaagtaacttgtaaaataataggcatctgtg |
16956190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 410
Target Start/End: Original strand, 16934978 - 16935048
Alignment:
| Q |
340 |
cccatcatgtttataaattgtaatatgcaatagaaaaattacactttcaattccattatccaggacaggaa |
410 |
Q |
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| T |
16934978 |
cccatcatatttataaattgtaatatgacattgcaaagctgcactttcgattccattatccaggactggaa |
16935048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 415
Target Start/End: Complemental strand, 26633834 - 26633720
Alignment:
| Q |
302 |
gagtatcaccatgttaaccacagatttc-ttctttccttcccatcatgtttataaattgtaatatgcaatagaaaaattacactttcaattccattatcc |
400 |
Q |
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| T |
26633834 |
gagtattacaatgttatccacagatttccttccttacgtaccatcatgtttatatattgtaatatgacattgcaaagttagactttcaattccattatcc |
26633735 |
T |
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| Q |
401 |
aggacaggaacacag |
415 |
Q |
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| T |
26633734 |
aagactggaacacag |
26633720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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