View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17962_low_9 (Length: 461)

Name: NF17962_low_9
Description: NF17962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17962_low_9
NF17962_low_9
[»] chr4 (10 HSPs)
chr4 (13-449)||(24153475-24153910)
chr4 (16-205)||(50723020-50723209)
chr4 (13-187)||(4377498-4377684)
chr4 (117-205)||(2815772-2815860)
chr4 (117-205)||(36248071-36248159)
chr4 (28-121)||(5882718-5882811)
chr4 (123-187)||(2158847-2158911)
chr4 (117-187)||(33518292-33518362)
chr4 (13-78)||(2158917-2158982)
chr4 (68-121)||(2815867-2815920)
[»] chr1 (11 HSPs)
chr1 (28-205)||(9539343-9539520)
chr1 (29-205)||(10780900-10781076)
chr1 (13-205)||(6226881-6227084)
chr1 (117-187)||(25031162-25031232)
chr1 (28-205)||(34912509-34912698)
chr1 (127-185)||(8065199-8065257)
chr1 (55-187)||(1016758-1016901)
chr1 (122-182)||(31738109-31738169)
chr1 (13-108)||(9477932-9478027)
chr1 (117-187)||(27464077-27464147)
chr1 (117-159)||(9477870-9477912)
[»] chr3 (13 HSPs)
chr3 (13-205)||(26285536-26285728)
chr3 (13-185)||(23778476-23778657)
chr3 (13-121)||(36477746-36477854)
chr3 (13-184)||(24310096-24310278)
chr3 (117-205)||(38573175-38573263)
chr3 (55-187)||(26903367-26903510)
chr3 (55-187)||(36617530-36617673)
chr3 (21-120)||(36475763-36475863)
chr3 (117-187)||(25032075-25032145)
chr3 (13-121)||(7728763-7728871)
chr3 (117-205)||(7856697-7856785)
chr3 (122-182)||(35502350-35502410)
chr3 (13-121)||(38573270-38573378)
[»] chr7 (16 HSPs)
chr7 (13-196)||(33941341-33941535)
chr7 (28-121)||(30074358-30074451)
chr7 (13-205)||(2945098-2945301)
chr7 (117-187)||(38300194-38300264)
chr7 (20-196)||(1691857-1692047)
chr7 (117-187)||(8256765-8256835)
chr7 (55-121)||(43265687-43265753)
chr7 (28-121)||(10702848-10702941)
chr7 (117-190)||(24658636-24658709)
chr7 (117-177)||(1247850-1247910)
chr7 (13-121)||(38293519-38293627)
chr7 (122-184)||(25233168-25233230)
chr7 (117-186)||(46090010-46090079)
chr7 (13-108)||(24039503-24039598)
chr7 (116-178)||(25617885-25617947)
chr7 (117-187)||(43265760-43265830)
[»] chr5 (5 HSPs)
chr5 (28-205)||(43144762-43144950)
chr5 (29-184)||(36745159-36745325)
chr5 (122-184)||(5569180-5569242)
chr5 (20-157)||(36633701-36633849)
chr5 (66-121)||(25819371-25819426)
[»] chr6 (7 HSPs)
chr6 (29-205)||(6689395-6689582)
chr6 (32-205)||(2919764-2919948)
chr6 (54-187)||(24901898-24902042)
chr6 (55-187)||(18817129-18817272)
chr6 (29-205)||(21883456-21883643)
chr6 (28-205)||(14607482-14607670)
chr6 (28-118)||(19266922-19267012)
[»] chr8 (7 HSPs)
chr8 (17-205)||(2148580-2148779)
chr8 (28-196)||(24556623-24556802)
chr8 (20-103)||(6802471-6802554)
chr8 (29-103)||(32161112-32161186)
chr8 (55-187)||(45485948-45486091)
chr8 (13-121)||(29866459-29866567)
chr8 (118-196)||(6802580-6802658)
[»] chr2 (10 HSPs)
chr2 (15-187)||(32033191-32033372)
chr2 (13-180)||(3356797-3356975)
chr2 (13-121)||(18458889-18458997)
chr2 (55-187)||(4075659-4075801)
chr2 (55-121)||(4075860-4075926)
chr2 (28-121)||(6141587-6141680)
chr2 (28-102)||(11562318-11562392)
chr2 (122-199)||(18703482-18703559)
chr2 (117-187)||(11562222-11562292)
chr2 (136-185)||(7700561-7700610)
[»] scaffold0535 (1 HSPs)
scaffold0535 (122-183)||(9895-9956)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 24153910 - 24153475
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24153910 tttataaatgtgccggaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagggcttccaa 24153811  T
Q  113 atctttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtttcattta 212  Q
    |||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  24153810 atctttatggaaacaaataagtgcaacacatttactatagtttataagcatgtgaagttgactttgctcttggcggtagcaactacaaatgtttcattta 24153711  T
Q  213 gtgttctacttcccaaactttgaatctctaaataacaacttctcatgtttacaggttttccattttaatttgtgtttacaagtgcactgtaggcttcacg 312  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  24153710 gtgttctatttcccaaactttgaatctctaaataacaacttctcatgtttactggttttccattttaatttgtgtttacaagtgcaccgtaggcttcacg 24153611  T
Q  313 agatgatgtattgagataagattgaaagtttaggatggtaaatggagtcattgttgtgatctataaggtttaaatcaaccacgatacgatcaagaataaa 412  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24153610 agatgatttattgagataagattgaaagtttaggatggaaaatggagtcattgttgtgatctataaggtttaaatcaaccacgatacgatcaagaataaa 24153511  T
Q  413 gacaaaatcaattaacactttacataacgtagatatt 449  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24153510 gacaaaatcaattaacac-ttacataacgtagatatt 24153475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 50723020 - 50723209
Alignment:
Q  16 ataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatc 115  Q
    ||||||||||  ||||||| | ||| ||||||||||| | |||||| || ||||||||||| ||| ||||||||||| ||||||||||  |||  | |||    
T  50723020 ataaatgtgctggaagtggtgctacgccatcaacttaagtattatgttacaaatgttcaatttgacccaaaatttgctaagttgaaaggactttaagatc 50723119  T
Q  116 tttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    |||||| |||||||||||||||||||||||| | | |||||| | | | ||||||||||||| ||||||||| ||| |||| ||| ||||    
T  50723120 tttgtgaaaacaaataaatgcaacacatttgctgtggtttattaacttttgaagttgactttactcttgccggtagcaactgcaagtgtt 50723209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 4377684 - 4377498
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| |||||||  |||||||| ||| |  |||||||| |||||||| || | |||||| |||||| ||||||||||| |||||||||| |||| ||     
T  4377684 tttatagatgtgccgaaagtggcgatacgcactcaacttaagaattatgttacagatgttcgatctgacccaaaatttgccaagttgaaagggctttcag 4377585  T
Q  113 atct-----------ttgtggaaacaaataaatgcaacacatttgttat-agtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||||           |||||||||||||||| ||||||||||||| ||| | ||||||| | | |||||||||||||||||||||||    
T  4377584 atctttgtgcatgacttgtggaaacaaataagtgcaacacatttgctatgattttataaacttttgaagttgactttgctcttgccg 4377498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 2815860 - 2815772
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| | | | |||||| |||||||||||||| ||| |||| ||| ||||    
T  2815860 ttgtggaaacaaataagtgcaacacatttgctatggtttataaacttttcaagttggctttgctcttgccggtagcaactgcaagtgtt 2815772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 36248159 - 36248071
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    |||||||||||||||| |||||||| ||||||||  ||||||| | | |||||||| |||||||||||||| ||| |||| ||| ||||    
T  36248159 ttgtggaaacaaataagtgcaacacttttgttatgatttataaacttttgaagttggctttgctcttgccggtagcaactgcaagtgtt 36248071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 5882811 - 5882718
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    |||||| |||||| ||||||||||| |||||||  ||||||||||  |||||| | ||||||||| |||||||| | |||| || |||||||||    
T  5882811 gaagtgtcgttacgccatcaacttaagaattatattaaaaatgtttgatctgaccgaaaatttgctaagttgaatgggctttcatatctttgtg 5882718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 2158911 - 2158847
Alignment:
Q  123 aaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||||||| ||||||||||||| ||| |||| ||||| | ||||||||  |||||||||||||    
T  2158911 aaacaaataagtgcaacacatttgctatggtttgtaagcttttgaagttggttttgctcttgccg 2158847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 33518362 - 33518292
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||||||||||||| ||||||||||||||  | |||||||| | | | |||||| |||| |||||||||    
T  33518362 ttgtggaaacaaataagtgcaacacatttgtcgtggtttataaacttttaaagttggctttactcttgccg 33518292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 2158982 - 2158917
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatct 78  Q
    |||||| ||||||  ||||||||||||| ||||||||||| |  ||||| || |||||||||||||    
T  2158982 tttatagatgtgcaggaagtggcgttacgccatcaacttaggttttatgttacaaatgttcaatct 2158917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 2815920 - 2815867
Alignment:
Q  68 atgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    |||||| |||||| ||||||||||| |||||||||| |||| || |||||||||    
T  2815920 atgttcgatctgacccaaaatttgctaagttgaaagggctttcagatctttgtg 2815867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 9539343 - 9539520
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtggaaaca 127  Q
    ||||||||||||  ||||||||||| |||||||| || |||||||| |||||||||||||||||| |||||||| | ||||||| |||||||||||||||    
T  9539343 gaagtggcgttatgccatcaacttaagaattatgttacaaatgttcgatctgatccaaaatttgctaagttgaaggggcttccagatctttgtggaaaca 9539442  T
Q  128 aataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    ||||| ||||||||||||||| | |||||||| | | ||||||||  ||||||||||||||||| |||| ||| ||||    
T  9539443 aataagtgcaacacatttgttttggtttataaacttttgaagttggttttgctcttgccgatagcaactgcaagtgtt 9539520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 10780900 - 10781076
Alignment:
Q  29 aagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtggaaacaa 128  Q
    |||||||||||| |  ||||||||  ||||||| || | |||||| |||||| | ||||||||| ||||||||||  ||| || ||||||||||||||||    
T  10780900 aagtggcgttacgcactcaacttaataattatgttacatatgttcgatctgacctaaaatttgctaagttgaaaggactttcagatctttgtggaaacaa 10780999  T
Q  129 ataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    |||| ||||||||||||  |||||||||||| | | ||||||||  ||||||||||||| ||| |||| ||| ||||    
T  10781000 ataagtgcaacacatttactatagtttataaacttttgaagttggttttgctcttgccggtagcaactgcaagtgtt 10781076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 6227084 - 6226881
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| |||| || ||||| |||||||||  |||||||| |||||||| ||||||||||| |||||| |||||| |||  |||||| ||| |||| ||     
T  6227084 tttatagatgttccggaagtagcgttacacactcaacttaagaattatgttaaaaatgttcgatctgacccaaaagttgttaagttgtaagggctttcag 6226985  T
Q  113 atctttgtg-----------gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaa 201  Q
    |||||||||           ||||||||||| ||||||||||||| ||| |||||||| | | ||||||||||||||||||||||||||| |||| |||     
T  6226984 atctttgtgcaaaacttgtggaaacaaataagtgcaacacatttgctatggtttataaacttttgaagttgactttgctcttgccgatagcaactgcaag 6226885  T
Q  202 tgtt 205  Q
    ||||    
T  6226884 tgtt 6226881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 25031232 - 25031162
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||||||||||||||||||||||||||| ||| |||||||| | | |||||||||||||||||||||||    
T  25031232 ttgtggaaacaaataaatgcaacacatttgctatggtttataaacttttgaagttgactttgctcttgccg 25031162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 34912698 - 34912509
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtg-cttccaaatctttg------- 119  Q
    ||||||||||||||||||||||||| |||||||| || ||||||||||||| |   ||||||||| ||||| ||| || ||| || |||||||           
T  34912698 gaagtggcgttacaccatcaacttaggaattatgttataaatgttcaatctaacttaaaatttgctaagtttaaaatgactttcagatctttgtccaaaa 34912599  T
Q  120 ----tggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
        ||||||||||||| |||||||||||   |||||||||||||| | |||||||| |||||  ||||||||||| |||| ||| ||||    
T  34912598 cttctggaaacaaataagtgcaacacattcactatagtttataagcttttgaagttggctttgtccttgccgatagtaactgcaagtgtt 34912509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 8065257 - 8065199
Alignment:
Q  127 aaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgc 185  Q
    |||||||||||||||||||||||| |||||||| | | |||||||| ||||||||||||    
T  8065257 aaataaatgcaacacatttgttatggtttataaacttttgaagttggctttgctcttgc 8065199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 1016758 - 1016901
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct-----------ttgtggaaacaaataaatgcaacacat 143  Q
    ||||||| || ||||||| ||||||||||||||||| |||||||||||| |||| |  ||||           |||||||||||||||| ||||| ||||    
T  1016758 aattatgttagaaatgttaaatctgatccaaaattttcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaataagtgcaagacat 1016857  T
Q  144 ttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||| | | |||| ||||| | |||||||| ||||||||||||||    
T  1016858 ttgctttggtttttaagcttttgaagttggctttgctcttgccg 1016901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 31738169 - 31738109
Alignment:
Q  122 gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctct 182  Q
    |||||||||||||||||||||||||||||  ||||||||  | | ||||||||||||||||    
T  31738169 gaaacaaataaatgcaacacatttgttatgatttataagtttttaaagttgactttgctct 31738109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 9478027 - 9477932
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgctt 108  Q
    |||||| ||||||| ||||| | ||||| |  |||||||| |||||||| || |||||||| |||| | ||||||||||| |||||||||| ||||    
T  9478027 tttatagatgtgccggaagtagtgttacgctgtcaacttaagaattatggtacaaatgttcgatctaacccaaaatttgctaagttgaaagggctt 9477932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 27464077 - 27464147
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||||||||||||| ||||| |||||||||||  ||||||||| | |||||||| ||||| ||| ||||    
T  27464077 ttgtggaaacaaataagtgcaatacatttgttatgatttataagcttttgaagttggctttgttctagccg 27464147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 9477912 - 9477870
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataa 159  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||    
T  9477912 ttgtggaaacaaataagtgcaacacatttgctatggtttataa 9477870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 26285536 - 26285728
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||||||||| | ||||||| ||||| || ||||||||  ||||||| || |||| ||| |||||| | ||||||| | |||||||||| |||| ||     
T  26285536 tttataaatgtgtcggaagtggtgttacgccgtcaacttaataattatgttacaaattttcgatctgaccaaaaatttactaagttgaaagggctttcag 26285635  T
Q  113 atctttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    ||| |||||||||||||||| ||||||| |||| |||| |||||||||| | ||||||||||||||||||| ||| ||| |||||||| ||||    
T  26285636 atcgttgtggaaacaaataagtgcaacaaatttattatggtttataagcttttgaagttgactttgctctttccgttagcaactacaagtgtt 26285728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 23778657 - 23778476
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||||| |||||| |||||| || |||||||| |||||||| |  |||||||| |||||| ||||||||||  |||||||||| ||||  |     
T  23778657 tttatagatgtgccggaagtgacgttaccccgtcaacttaagaattatgttgcaaatgttcgatctgacccaaaatttgttaagttgaaagggctttaag 23778558  T
Q  113 atctttgtg---------gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgc 185  Q
    |||||||||         ||||||||||||||||||||||||| ||| |||||||| | | |||||||| ||||||||||||    
T  23778557 atctttgtgaaacttgtggaaacaaataaatgcaacacatttgctatggtttataaacttttgaagttggctttgctcttgc 23778476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 36477746 - 36477854
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| |||||||  ||||||||||||||  |||||||| |||||||| || |||||||| |||||| ||||||||||| |||||||||| |||| ||     
T  36477746 tttatagatgtgccgaaagtggcgttacacactcaacttaagaattatgttacaaatgttcgatctgacccaaaatttgctaagttgaaagggctttcat 36477845  T
Q  113 atctttgtg 121  Q
    |||||||||    
T  36477846 atctttgtg 36477854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 24310278 - 24310096
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||||| |||||||| ||||||   ||||||| |||||||| || |||||||| ||||||  |||||||||| | |||||||| |||| ||     
T  24310278 tttatagatgtgccggaagtggcattacacacgcaacttaagaattatgttacaaatgttcgatctgactcaaaatttgctatgttgaaagggctttcag 24310179  T
Q  113 atct-----------ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttg 184  Q
    ||||           |||||||||||||||| ||| ||||||||| ||| |||||||| | | ||||||||||||||||||||    
T  24310178 atctgtgtgcaaaacttgtggaaacaaataagtgcgacacatttgctatggtttataaacttttgaagttgactttgctcttg 24310096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 38573263 - 38573175
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| | | |||||||| |||||||||||||||||| |||| ||| ||||    
T  38573263 ttgtggaaacaaataagtgcaacacatttgctattgtttataaacttttgaagttggctttgctcttgccgatagcaactgcaagtgtt 38573175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 26903510 - 26903367
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct-----------ttgtggaaacaaataaatgcaacacat 143  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| |||| |  ||||           |||||||||||||||| ||||| ||||    
T  26903510 aattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaataagtgcaagacat 26903411  T
Q  144 ttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||| | | |||| ||||| | |||||||| ||||||||||||||    
T  26903410 ttgctttggtttttaagcttttgaagttggctttgctcttgccg 26903367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 36617530 - 36617673
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct-----------ttgtggaaacaaataaatgcaacacat 143  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| |||| |  ||||           |||||||||||||||| ||||| ||||    
T  36617530 aattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaataagtgcaagacat 36617629  T
Q  144 ttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||| | | |||| ||||| | |||||||| ||||||||||||||    
T  36617630 ttgctttggtttttaagcttttgaagttggctttgctcttgccg 36617673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 36475863 - 36475763
Alignment:
Q  21 tgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatc-caaaatttgcaaagttgaaagtgcttccaaatctttg 119  Q
    |||||| || |||||||||||||||||||||| |||||||| || ||||||| ||| ||| |  |||| |||| |||||||||| |||| ||||||||||    
T  36475863 tgtgccggatgtggcgttacaccatcaacttaggaattatgttacaaatgtttaatttgaccaaaaaaattgctaagttgaaagggctttcaaatctttg 36475764  T
Q  120 t 120  Q
    |    
T  36475763 t 36475763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 25032075 - 25032145
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||||||||||||||||||||||||||||| |||| |||||| | | | ||||||||  |||||||||||||    
T  25032075 ttgtggaaacaaataaatgcaacacatttattatggtttattaacttttgaagttggttttgctcttgccg 25032145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 7728763 - 7728871
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||| | ||||||||||||  |  |||||||| |||||||| || |||||||  |||||| ||||||||||| |||||||||| | || ||     
T  7728763 tttatagatgtgtcggaagtggcgttatgcactcaacttaagaattatgttacaaatgttatatctgacccaaaatttgctaagttgaaagggttttcag 7728862  T
Q  113 atctttgtg 121  Q
    |||||||||    
T  7728863 atctttgtg 7728871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 7856785 - 7856697
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    |||||||||||||||| |||||||| |||  ||| |||||||| | | |||||||| ||||||| |||||| ||| |||| ||| ||||    
T  7856785 ttgtggaaacaaataagtgcaacacgtttcctatggtttataaacttttgaagttggctttgcttttgccggtagcaactgcaagtgtt 7856697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 35502350 - 35502410
Alignment:
Q  122 gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctct 182  Q
    ||||||||||| |||||| ||||||||||  ||||||||| | ||||||||| ||||||||    
T  35502350 gaaacaaataagtgcaacccatttgttatgatttataagcttttgaagttgattttgctct 35502410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 38573378 - 38573270
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| |||| || ||||| ||||||| |  ||| |||| |||||||| || | |||||| |||||| |||||| |||  |||||| ||| |||| |||    
T  38573378 tttatagatgttccggaagtagcgttacgcactcagcttaagaattatgttacagatgttcgatctgacccaaaagttgttaagttgtaagggctttcaa 38573279  T
Q  113 atctttgtg 121  Q
    |||||||||    
T  38573278 atctttgtg 38573270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 33941341 - 33941535
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||||  |||||||||||||| | |||||||| |||||||| || |||||||| |||||| ||||||||||| |||||||||| |||| ||     
T  33941341 tttatagatgtgctggaagtggcgttacatcgtcaacttaagaattatgttataaatgttcgatctgacccaaaatttgctaagttgaaagggctttcag 33941440  T
Q  113 atct-----------ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaact 196  Q
    ||||           |||||||||||||||| ||||||||||||| ||| | |||||| | | ||||||||  ||||||||||||| ||| ||||    
T  33941441 atctttgtgcaaaacttgtggaaacaaataagtgcaacacatttgctatggattataaacttttgaagttggatttgctcttgccggtagcaact 33941535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 30074358 - 30074451
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    ||||||||||||||||||||||||| |||||||  || |||||||| |||||| | ||||||||| |||||||||| |||| ||||||||||||    
T  30074358 gaagtggcgttacaccatcaacttaagaattatattacaaatgttcgatctgaacgaaaatttgctaagttgaaagggctttcaaatctttgtg 30074451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 2945098 - 2945301
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||| | |||||| ||||||  |||||||||| |||||||  || |||||||| |||||| | ||||||||| |||||||||| |||| ||     
T  2945098 tttatagatgtgtcggaagtgacgttacgtcatcaacttaagaattatattacaaatgttcgatctgaccgaaaatttgctaagttgaaagggctttcag 2945197  T
Q  113 atctttgt-----------ggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaa 201  Q
    ||||||||           |||| ||||||||||||||||||||| |||  ||||||| | | |||||||||||||||||||| || ||| |||| |||     
T  2945198 atctttgtacaaaacttgtggaagcaaataaatgcaacacatttgctatgatttataaacttttgaagttgactttgctcttgtcggtagcaactgcaag 2945297  T
Q  202 tgtt 205  Q
    ||||    
T  2945298 tgtt 2945301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 38300194 - 38300264
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||||||||||||| ||||||||||||| ||| |||||||| | | |||||||||||||||||||||||    
T  38300194 ttgtggaaacaaataagtgcaacacatttgctatggtttataaacttttgaagttgactttgctcttgccg 38300264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 1692047 - 1691857
Alignment:
Q  20 atgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaa---agttgaaagtgcttccaaatct 116  Q
    ||||||||||||||||||||| |  |||||||| |||||||| || |||||||| |||||| ||| ||||||| |   |||||||||  ||| || ||||    
T  1692047 atgtgccagaagtggcgttacgcactcaacttaagaattatgttacaaatgttcgatctgacccataatttgctaattagttgaaaggactttcagatct 1691948  T
Q  117 ttg-----------tggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaact 196  Q
    |||           ||||||||||||| ||||||||||||| ||| |||||||| | | ||||||||  ||||||| |||| |||| ||||    
T  1691947 ttgtgcaaaacttatggaaacaaataagtgcaacacatttgctatggtttataaacttttgaagttggttttgctcatgccaatagcaact 1691857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 8256835 - 8256765
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||||||||| |||||| |||| |||||||| ||| |||||||||| | ||||||||| |||||||||||||    
T  8256835 ttgtggaaataaataagtgcagcacatttgctattgtttataagcttttgaagttgattttgctcttgccg 8256765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 43265687 - 43265753
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| |||| |  |||||||||    
T  43265687 aattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtg 43265753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 10702941 - 10702848
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    ||||| |||||||||  | |||||| |||||||| || |||||||| |||||| ||||||||||| |||||||||  |||| || |||||||||    
T  10702941 gaagttgcgttacacactgaacttaagaattatgttacaaatgttctatctgacccaaaatttgctaagttgaaaaggctttcagatctttgtg 10702848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 24658709 - 24658636
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgata 190  Q
    |||||||||||||||| ||||||||||||| |||  ||||||| | | ||||||||  ||||||||||||||||    
T  24658709 ttgtggaaacaaataagtgcaacacatttgctatgatttataaacttttgaagttggttttgctcttgccgata 24658636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 1247850 - 1247910
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgacttt 177  Q
    |||||||||||||||| ||||||||||||| |||  ||||||||| | |||||||||||||    
T  1247850 ttgtggaaacaaataagtgcaacacatttgctatgatttataagcttttgaagttgacttt 1247910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 38293519 - 38293627
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| |||| || ||||||||||||| |  |||||||| |||||||| || ||||||||||||||| |||||| |||  |||||| ||| |||| ||     
T  38293519 tttatagatgttccggaagtggcgttacgcactcaacttaagaattatgttacaaatgttcaatctgacccaaaagttgttaagttgtaagggctttcag 38293618  T
Q  113 atctttgtg 121  Q
    || ||||||    
T  38293619 atttttgtg 38293627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 25233230 - 25233168
Alignment:
Q  122 gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttg 184  Q
    ||||||||||| |||||||||||||||||  ||||||||| | |||| ||| |||||||||||    
T  25233230 gaaacaaataagtgcaacacatttgttatgatttataagcttttgaaattggctttgctcttg 25233168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 46090010 - 46090079
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgcc 186  Q
    ||||| |||||||||| ||||||||||||| ||| |||||||||| |  ||||| | |||||||||||||    
T  46090010 ttgtgaaaacaaataagtgcaacacatttgctatggtttataagctttggaagtcggctttgctcttgcc 46090079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 24039598 - 24039503
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgctt 108  Q
    |||||| |||||||  ||||||  ||||||  |||||||| |||||||| || |||| ||| |||| | ||||||||||| |||||||||| ||||    
T  24039598 tttatagatgtgccgaaagtggtattacacactcaacttaagaattatgttacaaatattctatctaacccaaaatttgctaagttgaaagggctt 24039503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 25617947 - 25617885
Alignment:
Q  116 tttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttg 178  Q
    ||||| |||||||||||||| |||||||||| |||  ||||||||| | ||||||||| ||||    
T  25617947 tttgttgaaacaaataaatgtaacacatttgctatgatttataagcttttgaagttgattttg 25617885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 43265760 - 43265830
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||||||||||||| ||||| ||| ||| | | |||| ||||| | |||||||| ||||||||||||||    
T  43265760 ttgtggaaacaaataagtgcaagacacttgctttggtttttaagcttttgaagttggctttgctcttgccg 43265830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 43144950 - 43144762
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg------ 121  Q
    |||||| | ||||| |||||||||| |||||||  || |||||||| |||||| | ||||||||| |||||||||| | || ||||||||||||          
T  43144950 gaagtgacattacaacatcaacttaagaattatattacaaatgttcgatctgaccgaaaatttgctaagttgaaagagttttcaaatctttgtgcaaaac 43144851  T
Q  122 -----gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
         |||||||||||||| |||||||||| ||| |||||||| | | ||||||||||||||||||||||| ||| |||| ||| ||||    
T  43144850 ttgtggaaacaaataaatgtaacacatttgctatggtttataaacttttgaagttgactttgctcttgccggtagcaactgcaagtgtt 43144762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 36745325 - 36745159
Alignment:
Q  29 aagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttg--------- 119  Q
    |||||||||||| |  |||||||| |||||||| || |||||||| |||||| ||||| ||||| |||||||||| |||| || |||||||             
T  36745325 aagtggcgttacgcactcaacttaagaattatgttacaaatgttcgatctgacccaaagtttgctaagttgaaagggctttcagatctttgtgcaaaaat 36745226  T
Q  120 --tggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttg 184  Q
      || ||||| |||| ||||||||||||| ||| |||||||| | | ||||||||||||||||||||    
T  36745225 tatgaaaacatataagtgcaacacatttgatatggtttataaacttttgaagttgactttgctcttg 36745159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 5569242 - 5569180
Alignment:
Q  122 gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttg 184  Q
    |||| |||||| |||||||||||||||||  ||||| ||| | ||||||||||||||||||||    
T  5569242 gaaataaataagtgcaacacatttgttatgatttattagcttttgaagttgactttgctcttg 5569180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 36633701 - 36633849
Alignment:
Q  20 atgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatc---- 115  Q
    ||||||| ||||||||||||| |||| |||||| ||||| || || |||| ||| || ||||||||||||||| |||| |||  | ||| || |||        
T  36633701 atgtgccggaagtggcgttacgccattaacttaagaattgtgttacaaatattcgatttgatccaaaatttgctaagtcgaatctactttcacatctttg 36633800  T
Q  116 -------tttgtggaaacaaataaatgcaacacatttgttatagtttat 157  Q
           ||||||||||||||||||||||||||||||| ||| ||||||    
T  36633801 tgcaaaatttgtggaaacaaataaatgcaacacatttgctatggtttat 36633849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 25819426 - 25819371
Alignment:
Q  66 aaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    ||||||| ||||||||||||||||||| ||||| |||| |  ||||||||||||||    
T  25819426 aaatgttaaatctgatccaaaatttgctaagttaaaagggaatccaaatctttgtg 25819371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 6689582 - 6689395
Alignment:
Q  29 aagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctt----------- 117  Q
    ||||||||||||||||||||||||  ||||||| || |||| |||||||||  || |||||||| |||||||||| |||| || |||||               
T  6689582 aagtggcgttacaccatcaacttaaaaattatgttataaattttcaatctggccctaaatttgctaagttgaaagggctttcagatcttcgtgtaaaact 6689483  T
Q  118 tgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
    |||| |||||||||| | ||||||||||| |||  ||||||||| | ||||||||||||||||||||||| ||| |||| ||| ||||    
T  6689482 tgtgaaaacaaataagtacaacacatttgctatgatttataagcttttgaagttgactttgctcttgccggtagcaactgcaagtgtt 6689395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 2919764 - 2919948
Alignment:
Q  32 tggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg---------- 121  Q
    |||||||||||||||||||||  | |||||  | |||||||| || ||| ||||||||||| |||||||||  |||| |  |||||||||              
T  2919764 tggcgttacaccatcaacttaatagttatgtaacaaatgttcgatttgacccaaaatttgctaagttgaaacggctttcggatctttgtgcaaaacttat 2919863  T
Q  122 -gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
     ||||||||||||||||||||||||||||| |||||| | | | ||||||||  ||||||||||||| ||| |||| ||| ||||    
T  2919864 ggaaacaaataaatgcaacacatttgttatggtttattaacttttgaagttggttttgctcttgccggtagcaactgcaagtgtt 2919948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 24902042 - 24901898
Alignment:
Q  54 gaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct-----------ttgtggaaacaaataaatgcaacaca 142  Q
    |||||||| || ||||||| |||||||||||||||||||||||||||||| |||| |  ||||           |||||||||||||||| ||||| |||    
T  24902042 gaattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaataagtgcaagaca 24901943  T
Q  143 tttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||| | | |||| ||||| | |||||||| ||||||||||||||    
T  24901942 tttgctttggtttttaagcttttgaagttggctttgctcttgccg 24901898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 18817272 - 18817129
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct-----------ttgtggaaacaaataaatgcaacacat 143  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| |||| |  ||||           |||||||||||||||| ||||| ||||    
T  18817272 aattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaataagtgcaagacat 18817173  T
Q  144 ttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||| | | |||| ||||| | |||||||| ||||||||||||||    
T  18817172 ttgctttggtttttaagcttttgaagttggctttgctcttgccg 18817129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 21883643 - 21883456
Alignment:
Q  29 aagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg------- 121  Q
    ||||||||||||||  |||||||| |||||||| || ||||||||||||||| |||||| |||  |||||| ||  ||||  | |||||||||           
T  21883643 aagtggcgttacacactcaacttaagaattatgttacaaatgttcaatctgacccaaaagttgttaagttgtaatggcttttagatctttgtgcaaaact 21883544  T
Q  122 ----gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
        ||||||||||| | ||||||||||| ||| |||||||| | | |||||||| |||||||||||||| ||| |||| ||| ||||    
T  21883543 tgtggaaacaaataagtacaacacatttgctatggtttataaacttttgaagttggctttgctcttgccggtagcaactgcaagtgtt 21883456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 14607482 - 14607670
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg------ 121  Q
    |||||| ||||| |||||||||||| |||||||| || |||||||| || ||| ||||||||||| ||||| ||   |||| || ||||||||           
T  14607482 gaagtgacgttagaccatcaacttaagaattatgttacaaatgttcgatatgacccaaaatttgctaagttaaattggctttcagatctttgttctaaac 14607581  T
Q  122 -----gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
         ||||||||||| ||||||||||  ||||| |||||||| | | |||||||||||||||||||| || ||| |||| ||| ||||    
T  14607582 atgtagaaacaaataagtgcaacacataagttatggtttataaacttttgaagttgactttgctcttgacggtagcaactgcaagtgtt 14607670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 118
Target Start/End: Original strand, 19266922 - 19267012
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatcttt 118  Q
    ||||||||||||| |||||||||||  ||||||| || |||||||| || ||| ||||||||||| || || |||| |||| || ||||||    
T  19266922 gaagtggcgttacgccatcaacttaaaaattatgttacaaatgttcgatttgacccaaaatttgctaaattaaaagggctttcagatcttt 19267012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 2148779 - 2148580
Alignment:
Q  17 taaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct 116  Q
    ||||||||||| |||||||||| | ||||||||||  |||||||| || ||||||| ||||||| ||||||||||||||||  |||| |||| || ||||    
T  2148779 taaatgtgccataagtggcgttgcgccatcaacttcagaattatgttataaatgttaaatctgacccaaaatttgcaaagtgtaaagggctttcagatct 2148680  T
Q  117 -----------ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactacaaatgtt 205  Q
               ||||| |||||||||| ||||||||||||  |||  ||||||||| | ||||| || ||||||||||| || ||| |||| ||||||||    
T  2148679 ttgtgcaaaacttgtgaaaacaaataagtgcaacacattttctatgatttataagcttttgaagctggctttgctcttgtcggtagcaactgcaaatgtt 2148580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 24556623 - 24556802
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct----------- 116  Q
    ||||||||||||| ||||||| ||| |||||||| || |||||||||||||||  ||| |||||| |||||||||| |||| || | ||               
T  24556623 gaagtggcgttacgccatcaagttaggaattatgttataaatgttcaatctgactcaagatttgctaagttgaaagggctttcataactttgtgcaaaac 24556722  T
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaact 196  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||  | |||||||| |||||||||| ||| ||| ||||    
T  24556723 ttgtgaaaacaaataagtgcaacacatttgttatggtttataagattttgaagttggctttgctcttaccggtagcaact 24556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 6802471 - 6802554
Alignment:
Q  20 atgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaag 103  Q
    ||||| ||||||||| ||||| ||||||||||| |||||||| || ||||||||||||||| ||||||||||| |||| |||||    
T  6802471 atgtgtcagaagtggtgttacgccatcaacttaggaattatgttataaatgttcaatctgacccaaaatttgccaagtcgaaag 6802554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 32161112 - 32161186
Alignment:
Q  29 aagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaag 103  Q
    |||||| ||||| ||||||||||| |||||||| || ||||||||||||||| ||||||||||| || |||||||    
T  32161112 aagtggtgttacgccatcaacttaagaattatgttacaaatgttcaatctgacccaaaatttgctaaattgaaag 32161186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 45485948 - 45486091
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatct-----------ttgtggaaacaaataaatgcaacacat 143  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| |||| |  ||||           |||||||||||||||| ||||| ||||    
T  45485948 aattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcggatctttgtgcaatacttgtggaaacaaataagtgcaagacat 45486047  T
Q  144 ttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    ||| | | |||| ||||| | |||||||| ||||||||||||||    
T  45486048 ttgctttggtttttaagcttttgaagttggctttgctcttgccg 45486091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 29866567 - 29866459
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||| | |||||| | |||||||||||||||| |||||||  || ||||||||  ||||| | ||||||||| |||||||||| | || ||     
T  29866567 tttatagatgtgtcggaagtgacattacaccatcaacttaagaattatattacaaatgttcgttctgaccgaaaatttgctaagttgaaagggttttcag 29866468  T
Q  113 atctttgtg 121  Q
    |||||||||    
T  29866467 atctttgtg 29866459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 6802580 - 6802658
Alignment:
Q  118 tgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaact 196  Q
    ||||||||||| |||||||||||||||||  ||  ||||||||| | ||||||||  |||||||| |||| ||| ||||    
T  6802580 tgtggaaacaattaaatgcaacacatttgaaatgctttataagcttttgaagttggttttgctctcgccggtagcaact 6802658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 32033372 - 32033191
Alignment:
Q  15 tataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaat 114  Q
    |||| ||||| | ||||||| ||| | ||||||||||| |||||||| || |||||||| ||| || ||||||||||| |||||||||| ||||  || |    
T  32033372 tatagatgtgtcggaagtggtgtttcgccatcaacttaagaattatgttataaatgttcgatccgacccaaaatttgctaagttgaaagggcttagaagt 32033273  T
Q  115 ctttg---------tggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||         ||||||||||||||||||||||||||| |||  ||||||| | | ||||||||  |||||||||||||    
T  32033272 ctttgcaaaacttgtggaaacaaataaatgcaacacatttgctatgatttataaacttttgaagttggttttgctcttgccg 32033191  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 3356797 - 3356975
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||| | | ||||||||||  |||||||||||||||||||  || |||||||  |||||| | ||||||||  |||||||||| |||| ||     
T  3356797 tttatagatgtgtcggtagtggcgttatgccatcaacttatgaattatattataaatgtttgatctgaccgaaaatttgttaagttgaaagggctttcat 3356896  T
Q  113 atctttgtg-----------gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgct 180  Q
    |||||||||           ||||||||||||||||||||||||| |||  ||||||| | | ||||||||||||||||    
T  3356897 atctttgtgcaaaacctgtggaaacaaataaatgcaacacatttgctatgatttataaacttttgaagttgactttgct 3356975  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 18458997 - 18458889
Alignment:
Q  13 tttataaatgtgccagaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaa 112  Q
    |||||| ||||||| |||||||||||||||  ||||||||  ||||||| || |||||||| |||| | | ||||||||| |||||||||| |||| ||     
T  18458997 tttatagatgtgccggaagtggcgttacacactcaacttaataattatgttacaaatgttctatctaacctaaaatttgctaagttgaaagggctttcag 18458898  T
Q  113 atctttgtg 121  Q
    |||||||||    
T  18458897 atctttgtg 18458889  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 4075801 - 4075659
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttcc----------aaatctttgtggaaacaaataaatgcaacacatt 144  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||           |||  |||||||||||||||| ||||| |||||    
T  4075801 aattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggcttccgatctttgtgcaatacttgtggaaacaaataagtgcaagacatt 4075702  T
Q  145 tgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    || | | |||| ||||| | |||||||| ||||||||||||||    
T  4075701 tgctttggtttttaagcttttgaagttggctttgctcttgccg 4075659  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 4075926 - 4075860
Alignment:
Q  55 aattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||    
T  4075926 aattatgttagaaatgttaaatctgatccaaaatttgcaaagttgaaagggctttcgaatctttgtg 4075860  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 6141680 - 6141587
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaagtgcttccaaatctttgtg 121  Q
    ||||||||||||| |  |||||||| |||||||| || |||||||| ||||||  |||||||||| |||||||||| |||| || |||||||||    
T  6141680 gaagtggcgttacgcactcaacttaagaattatgttacaaatgttctatctgacacaaaatttgctaagttgaaagggctttcagatctttgtg 6141587  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 11562392 - 11562318
Alignment:
Q  28 gaagtggcgttacaccatcaacttatgaattatgctaaaaatgttcaatctgatccaaaatttgcaaagttgaaa 102  Q
    ||||||||||||| ||||||||||| |||||||| || |||||||  || ||| ||||||||||| |||||||||    
T  11562392 gaagtggcgttacgccatcaacttaagaattatgttacaaatgtttgatttgacccaaaatttgctaagttgaaa 11562318  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 18703482 - 18703559
Alignment:
Q  122 gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccgatagaaactaca 199  Q
    ||||||||||| || |||| ||||| ||| |||||||||| | |||||||| ||||||||||||| |||| |||||||    
T  18703482 gaaacaaataagtgaaacatatttgatatggtttataagcttttgaagttggctttgctcttgcctatagcaactaca 18703559  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 11562292 - 11562222
Alignment:
Q  117 ttgtggaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctcttgccg 187  Q
    |||||||||||||||||||||||| ||||| |||||||||| | |   |||||||| |||| |||||||||    
T  11562292 ttgtggaaacaaataaatgcaacatatttgctatagtttattaactattgaagttggctttactcttgccg 11562222  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 7700610 - 7700561
Alignment:
Q  136 caacacatttgttatagtttataagcatgtgaagttgactttgctcttgc 185  Q
    ||||||||||||||| |||||||||| | ||| |||||||||||||||||    
T  7700610 caacacatttgttatggtttataagcttttgacgttgactttgctcttgc 7700561  T

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Target: scaffold0535 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 9956 - 9895
Alignment:
Q  122 gaaacaaataaatgcaacacatttgttatagtttataagcatgtgaagttgactttgctctt 183  Q
    ||||||||||| |||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  9956 gaaacaaataagtgcaacacatttgttatattttataagattttgaagttgactttgctctt 9895  T

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