View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_high_12 (Length: 289)
Name: NF17963_high_12
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_high_12 |
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| [»] scaffold0146 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 17899772 - 17899529
Alignment:
| Q |
19 |
aaaataagcttatattcgtcgtaagtttattaaatccaattttatgggcctaattccaagcccatatatttaattgtaatagttaaatcgagtttgttag |
118 |
Q |
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| T |
17899772 |
aaaataagcttatattcgtcgtaagtttattaaatccagttttatgggcctaattccaagcccatatatttaattgtaatagttaaatcgagtttgctag |
17899673 |
T |
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| Q |
119 |
acccgagcccaaacttgttcctaaccctaaagtcaccatcgttctatatattagacgccattgcatctcgttttcgtagttccttctcctactatatgtt |
218 |
Q |
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| T |
17899672 |
acccgagcccaaacttgttcctaaccctaaagtcaccattgttctatatattagacgccattgcatcttgttttcgcagttccttctcctac--tttgtt |
17899575 |
T |
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| Q |
219 |
tatacatcgtttcttctccagtttttcttgatatatcttgattgtt |
264 |
Q |
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| T |
17899574 |
tatacatcgtttcttctccattttttcttgatatatctcgattgtt |
17899529 |
T |
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Target: scaffold0146 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 32754 - 32843
Alignment:
| Q |
65 |
ggcctaattccaagcccatatatttaattgtaatagttaaatcgagtttgttagacccgagcccaaacttgttcctaaccctaaagtcac |
154 |
Q |
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| T |
32754 |
ggcctaattccaagcccatatatttatttattttagttaaattgagtttgctaggcccaagcctatactagttcctaaccctaaagtcac |
32843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 30412 - 30501
Alignment:
| Q |
65 |
ggcctaattccaagcccatatatttaattgtaatagttaaatcgagtttgttagacccgagcccaaacttgttcctaaccctaaagtcac |
154 |
Q |
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| T |
30412 |
ggcctaataccaagcccatatatttatttattttagttaaattgagtttgctaggcccaagcctatactagttcctaaccctaaagtcac |
30501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 30524 - 30616
Alignment:
| Q |
163 |
tatatattagacgccattgcatctcgttttcg--tagttccttctcctactatatgtttatacatcgtttcttctccagttt-ttcttgatata |
253 |
Q |
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| T |
30524 |
tatatattagacgccgttgcatctcattttccccta-ttccttctcctactttttttttatacctcgtttcttctccattttcttcttgatata |
30616 |
T |
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