View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_high_6 (Length: 317)
Name: NF17963_high_6
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_high_6 |
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| [»] scaffold0513 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 50832641 - 50832924
Alignment:
| Q |
17 |
tgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaacacaacaaaaagaaagctgcta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832641 |
tgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaacacaacaaaaagaaagctgcta |
50832740 |
T |
|
| Q |
117 |
aatcttgcaagatccatccccaaccaggaaattcaaatgagaatgcaacggctactaacatcctcaatgtcatattcagcaatatatgacctatacttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50832741 |
aatcttgcaagatccatccccaaccaggaaattcaaatgagaatgcaacggctactaacatcctcaatgtcatattcaacaatatatgacctatacttca |
50832840 |
T |
|
| Q |
217 |
ttctgttttgttgattgccttgtccaaatctgaaacagggctcttcacgaaaggacatgtttaacattaaacaccaatattagt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832841 |
ttctgttttgttgattgtcttgtccaaatctgaaacagggctcttcacgaaaggacatgtttaacattaaacaccaatattagt |
50832924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 50843212 - 50842929
Alignment:
| Q |
17 |
tgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaacacaacaaaaagaaagctgcta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843212 |
tgactctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaacacaacaaaaagaaagctgcta |
50843113 |
T |
|
| Q |
117 |
aatcttgcaagatccatccccaaccaggaaattcaaatgagaatgcaacggctactaacatcctcaatgtcatattcagcaatatatgacctatacttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50843112 |
aatcttgcaagatccatccccaaccaggaaattcaaatgagaatgcaacggctactaacatcctcaatgtcatattcaacaatatatgacctatacttca |
50843013 |
T |
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| Q |
217 |
ttctgttttgttgattgccttgtccaaatctgaaacagggctcttcacgaaaggacatgtttaacattaaacaccaatattagt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50843012 |
ttctgttttgttgattgtcttgtccaaatctgaaacagggctcttcacgaaaggacatgtttaacattaaacaccaatattagt |
50842929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 32792267 - 32792548
Alignment:
| Q |
20 |
ctctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaacacaacaaaaagaaagctgctaaat |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32792267 |
ctctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcatgatttttcacaatcaaacccaacccaacaaaaagaaagctgctaaat |
32792366 |
T |
|
| Q |
120 |
cttgcaagatccatccccaaccaggaaattcaaatgagaatgcaacggctactaacatcctcaatgtcatattcagcaatatatgacctatacttcattc |
219 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
32792367 |
cttgcaagatccatccccaactaggaaattcaaatgagcatgcaacggttactaacatcctcaacgtcatattcaacaatatatgacctatacttcattc |
32792466 |
T |
|
| Q |
220 |
t-gttttgttgattgccttgtccaaatctgaaacagggctcttcacgaaaggacatgtttaacattaaacaccaatattagt |
300 |
Q |
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| T |
32792467 |
tcgttttgttgattgccttgtccaaatctgaaacagggctcttcacgaaaggacatgtttaacattaaacaccaatattagt |
32792548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 24534443 - 24534724
Alignment:
| Q |
20 |
ctctactgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaacccaacacaacaaaaagaaagctgctaaat |
119 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
24534443 |
ctctactgcaatttcttccaatctgtaggttttaaaaacaacggctccatcatgatttttcacaatcaaacccaacccaacaaaaataaagctgctaaat |
24534542 |
T |
|
| Q |
120 |
cttgcaagatccatccccaaccaggaaattcaaatgagaatgcaacggctactaacatcctcaatgtcatattcagcaatatatgacctatacttcattc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
24534543 |
cttgcaagatccatccccaaccaggaaattcaaatgagcatgcaacggttactaacatcctcaacgtcatattcaacaatatatgacctatacttcattc |
24534642 |
T |
|
| Q |
220 |
t-gttttgttgattgccttgtccaaatctgaaacagggctcttcacgaaaggacatgtttaacattaaacaccaatattagt |
300 |
Q |
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| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24534643 |
tcgttttgttgatttccttgtccaaatctgaaacagggcacttcacgaaaggacatgtttaacattaaacaccaatattagt |
24534724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0513 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0513
Description:
Target: scaffold0513; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 7563 - 7495
Alignment:
| Q |
24 |
actgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccc |
92 |
Q |
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||||||||||| ||||||||||||| ||| |||||||| ||||||| ||||||||||||||| |||||| |
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| T |
7563 |
actgcaatttcctccaatctgcaggctttgaaaacaacagctccattgtgatttttcacaattaaaccc |
7495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 17721103 - 17721171
Alignment:
| Q |
24 |
actgcaatttcttccaatctgcaggttttaaaaacaacggctccatcgtgatttttcacaatcaaaccc |
92 |
Q |
| |
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||||||| |||||||||| |||||| ||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
17721103 |
actgcaagttcttccaatgtgcaggctttgaaaacaatggcttcatcgtgatttttcacaatcaaaccc |
17721171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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