View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_low_1 (Length: 583)
Name: NF17963_low_1
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 8e-78; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 412 - 567
Target Start/End: Complemental strand, 24401408 - 24401253
Alignment:
| Q |
412 |
tcatagtgtagagcatttttcttcctttactgagggatcttattaagcttacaataaagataatcctcaaatttcttggtcttaaactttggtggattct |
511 |
Q |
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| T |
24401408 |
tcatagtgtagagcatttttcttcctttactgagggatcttattaagcttacaataaagataatcctcaaatttcttggtcttatactttggtggattct |
24401309 |
T |
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| Q |
512 |
cttggttaatcaactttggatgaggaccaatttcatgttctggctttggctctatg |
567 |
Q |
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| T |
24401308 |
cttggttaaccaactttggatgaggaccaatttcatgttctggctttggctctatg |
24401253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 24401815 - 24401696
Alignment:
| Q |
10 |
atgaatcttaaacaagttattcaaaacttaattgaatttaatttcaattaaataatcaattatttgtaatagaaaattgtttccagtgttgtgtgttttg |
109 |
Q |
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| T |
24401815 |
atgaatcttaaacaagttattcaaaacttaattgaatttaatttcaattaaataatcaattatttgtaatagaaaattgtttccagtgttgtgtgttttg |
24401716 |
T |
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| Q |
110 |
cattcggactttagttgcaa |
129 |
Q |
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| T |
24401715 |
cattcggactttagttgcaa |
24401696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 24401539 - 24401443
Alignment:
| Q |
319 |
ctagtgaaaatttataattataacatagcacaaatagcagcatccaactttagctacatattttatttaattcatacatgccacatgacacgatcat |
415 |
Q |
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| T |
24401539 |
ctagtgaaaatttataattataacatagcacaattagcagcatccaactttagctacatattttatttaattcatacatgccacatgacaccatcat |
24401443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 430 - 567
Target Start/End: Complemental strand, 24409597 - 24409460
Alignment:
| Q |
430 |
ttcttcctttactgagggatcttattaagcttacaataaagataatcctcaaatttcttggtcttaaactttggtggattctcttggttaatcaactttg |
529 |
Q |
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| T |
24409597 |
ttcttcctttattgagggatcttattaagcttacagtaagcataatccttatatttcttggttttgtactttggaggattctcttggttaacaaactttg |
24409498 |
T |
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| Q |
530 |
gatgaggaccaatttcatgttctggctttggctctatg |
567 |
Q |
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| T |
24409497 |
ggtgaggaccaacttcgttttctggcttgggttctatg |
24409460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 301
Target Start/End: Complemental strand, 24401587 - 24401557
Alignment:
| Q |
271 |
agatggaataacataagatgatttctcctat |
301 |
Q |
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| T |
24401587 |
agatggaataacataagatgatttctcctat |
24401557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 554
Target Start/End: Complemental strand, 32772356 - 32772240
Alignment:
| Q |
438 |
ttactgagggatcttattaagcttacaataaagataatcctcaaatttcttggtcttaaactttggtggattctcttggttaatcaactttggatgagga |
537 |
Q |
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| T |
32772356 |
ttactgagggatcttattgagcttacagtatgcataatctttgtatttcttggtcttgaattttggtgggttgtcttggttaaccagttttgggtgaggc |
32772257 |
T |
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| Q |
538 |
ccaatttcatgttctgg |
554 |
Q |
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| T |
32772256 |
ccaacttcttgctctgg |
32772240 |
T |
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