View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17963_low_10 (Length: 307)

Name: NF17963_low_10
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17963_low_10
NF17963_low_10
[»] chr4 (1 HSPs)
chr4 (1-289)||(53791530-53791822)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 53791822 - 53791530
Alignment:
Q  1 gatgattggtttggtttcacagttcagcttactactgaaaaactaa-gcacccgtgagacaaacatgtgcaacgtgtacaacattggagttaaataaata 99  Q
    |||||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53791822 gatgattggtttggtttcacagttcagcttact---gaaaaactaaagcacccgtgagacaaacatgtgcaacgtgtacaacattggagttaaataaata 53791726  T
Q  100 aagtcaaataactcatttgttcgtttcgtatgcatacaaaactaacattatatctactctatactatatacaaaactaagtagcttttcttccttg---- 195  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  53791725 aagtcaaataactcatttgttcgttttgtatgcatacaaaactaacattatatctactctatactatatacaaaactaagtagcttttcttccttgtatt 53791626  T
Q  196 -tatttagcctgcctttgcgttattgaact-acttttttggaagacacaaacattatttcttggaaaaagactttccatgtcttgttcatggtatt 289  Q
     ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53791625 gtatttagcctggctttgcgttattgaactaacttttttggaagacacaaacattatttcttggaaaaagactttccatgtcttgttcatggtatt 53791530  T

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