View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_low_16 (Length: 282)
Name: NF17963_low_16
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 28473565 - 28473828
Alignment:
| Q |
18 |
atacatctaaaacatgagagggaaaaagtaattacaatcatcataaaataataaaaaggggtatattactactataaatcaccctttgtcctttaaaaat |
117 |
Q |
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| T |
28473565 |
atacatctaaaacatgagagggaaaaagtaattacaatcatcataaaataataaaaaggggtatattactactataaatcaccctttgtcctttaaaaat |
28473664 |
T |
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| Q |
118 |
ataaccacactttgtgtaataaaacaatcactcctagcataatttctatatgacacatatgctatctctatttctctaatatcacttttctaactatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28473665 |
ataaccacactttgtgtaataaaacaatcactcctagcataatttctatatgacacatatgctatctctatttctctaatatcacttttctaactatttt |
28473764 |
T |
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| Q |
218 |
tgtttcattgatcgctaannnnnnnnncctagtgtatatgagggaaaataatttatatttttatt |
282 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28473765 |
tgtttcattgatcgctaa-ttttttttcctagtgtatatgagggaaaataatttatatttttatt |
28473828 |
T |
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