View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_low_18 (Length: 273)
Name: NF17963_low_18
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 13379263 - 13379507
Alignment:
| Q |
18 |
gatgtttgtcaccttgcttcccacctctgtcacttcaccagcaacttcatgtctttacacaaatgagatgagaaagaaacaaaaaattagtttgttttat |
117 |
Q |
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| T |
13379263 |
gatgtttttcaccttgcttcccacctctgtcacttcaccagcaacttcatgtctttacacaaatgagatgagaaagaaacaaaaaattagtttgttttat |
13379362 |
T |
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| Q |
118 |
aacggagtaatgtttaactcattgnnnnnnnnnnnnnnnntggtttgttttgtgatgttagagtacccaggaactactgggtaagtagtactgccccact |
217 |
Q |
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| T |
13379363 |
aacagagtaatgtttaactcattgaaaataaaataaaaaatggtttgttttgtgatgttagagtacccaggaactactgggtaagtagtactgccccact |
13379462 |
T |
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| Q |
218 |
cattcttcgccatatggaggtccgagtgacatataccgcagaata |
262 |
Q |
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| T |
13379463 |
cattcttcgccatatggaggtccgagtgacatataccgcaaaata |
13379507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 13373592 - 13373687
Alignment:
| Q |
160 |
gtttgttttgtgatgtta-gagtacccaggaactactgggtaagtagtactgccccactcattcttcgccatatggaggtccgagtgacatatacc |
254 |
Q |
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| T |
13373592 |
gtttgttttatgatgttaagagtacccgggaactaaagggtaaatagaactaccccactcgttcttcagcatgtggagatccgaatgacatatacc |
13373687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 13373471 - 13373525
Alignment:
| Q |
22 |
tttgtcaccttgcttcccacctctgtcacttcaccagcaacttcatgtctttaca |
76 |
Q |
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| T |
13373471 |
tttgtcaccatgcttccaacctttgtcacttcaccagaaacttcatgcctttaca |
13373525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 13454385 - 13454427
Alignment:
| Q |
209 |
tgccccactcattcttcgccatatggaggtccgagtgacatat |
251 |
Q |
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| T |
13454385 |
tgccccattcattcttcgccttatgaaggtccgagtgacatat |
13454427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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