View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_low_2 (Length: 547)
Name: NF17963_low_2
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 650727 - 651241
Alignment:
| Q |
16 |
aatatgaccaaaatatgctaggtcaataataatgtaacatcattggttaatgtacagttcttgtttaactatggtgtaacatccaatttggctagttggt |
115 |
Q |
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| T |
650727 |
aatatgaccaaaatatgctaggtcaataataatgtaacatcattggttaatgtacagttcttgtttaactatggtgtaacatccaatttggctagttggt |
650826 |
T |
|
| Q |
116 |
tccactatgaattgttcatgaaatgtacccattcttttactagaaatatcaattccaagatccttaaagtttggtaatccctctacttgaacaccatctc |
215 |
Q |
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| T |
650827 |
tccactatgaattgttcatgaaatgtacccattcttttactagaaatatcaattccaagatccttaaagtttggtaatccctctacttgaacaccatctc |
650926 |
T |
|
| Q |
216 |
cacatatgagaaactgattaccaattatgaaggatcctgagacccttattgcaactccgtcttcaccgtgtgttcgacattgcagcttctcaaccacatg |
315 |
Q |
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| T |
650927 |
cacatatgagaaactgattaccaattatgaaggatcctgagacccttattgcaactccgtcttcaccgtgtgctcgacattgcagcttctcaaccacatg |
651026 |
T |
|
| Q |
316 |
caccaacttttccggtggccagtcaccgattaatgttgttcggatactcgatagagttgtaaagatattgttaggaccaatgtgttgtttcccagagaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
651027 |
caccaacttttccggtggccagtcaccgattaatgttgttcggatactcgatagagttgtaaagatattgttaggaccaatgtgctgtttcccagagaaa |
651126 |
T |
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| Q |
416 |
ctacaaaatatatacaagaataatgtttagcatgatctagaaggcttcaaaatttcag-aaaaaatgctcatggtccattcttgatatgtaaaacacaaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |
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| T |
651127 |
ctacaaaatatatacaagaataatgtttagcatgatctagaaggcttcaaaatttcagaaaaaaatgctcatggtccattcttgataggtaaaacactaa |
651226 |
T |
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| Q |
515 |
caatacacacactat |
529 |
Q |
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|||||||||| |||| |
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| T |
651227 |
caatacacactctat |
651241 |
T |
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