View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17963_low_27 (Length: 235)
Name: NF17963_low_27
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 54473882 - 54474093
Alignment:
| Q |
1 |
ttagttaatttggcatgagtttgtcaattcttgggaggattaattgtgaaaatgagagagattctttcattcctatcatttatcaatgcctaaggttaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54473882 |
ttagttaatttggcatgagtttgtcaattcttgggaggattaattgtgtaaatgagagagattctttcattcctatcatttatcaatgcctaaggttaag |
54473981 |
T |
|
| Q |
101 |
aagatatactttagttctagaaaataaccagaaaattctgggttagttaaacttggtctacttctaatgctaattgattcatgtcgttgttacttgttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54473982 |
aagatatactttagttctagaaaataaccagaaaattctgggtgagttaaacttggtctacttctaatgctaattgattcatgtcgttgttacttgttaa |
54474081 |
T |
|
| Q |
201 |
tgaagacacgcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
54474082 |
tgaagacacgcc |
54474093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University