View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_low_28 (Length: 231)
Name: NF17963_low_28
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7258123 - 7258347
Alignment:
| Q |
1 |
cgaacctcgtgagcaaaaatattttcctaacttttttatttatatttgggcaaaccaatgcatgactttatatttgggcaaaccaatgnnnnnnnatggc |
100 |
Q |
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| T |
7258123 |
cgaacctcgtgagcaaaaatattctgctaacttttttatttatatttgggcaaaccaatgcatgactttatatttgggcaaaccaatgttttttgatggc |
7258222 |
T |
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| Q |
101 |
atgtgcgtcacatgagttcaatagttctttaattcttaatcgggtttatatgaatttgaatttgatatannnnnnnnaattaaatcctttgtcatgtgac |
200 |
Q |
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| T |
7258223 |
atgtgcgtcacatgagttcaatagttctttaattcttaatcgggtttatatgaatttgaatttgatat---ttttttaattaaatcctttgtcatgtgac |
7258319 |
T |
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| Q |
201 |
aaaaacatatagacaaagaactaattaa |
228 |
Q |
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| T |
7258320 |
aaaaacatatagataaagatctaattaa |
7258347 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 9900327 - 9900274
Alignment:
| Q |
178 |
aattaaatcctttgtcatgtgacaaaaacatatagacaaagaactaattaagaa |
231 |
Q |
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| T |
9900327 |
aattaaatcccttgacatgtgacaaaaacatagatacaaagatctaattgagaa |
9900274 |
T |
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