View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_low_3 (Length: 523)
Name: NF17963_low_3
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Complemental strand, 910758 - 910268
Alignment:
| Q |
13 |
aaaatgatgggctatcctgaactgaagatcgttgcaaacaagcgataaaaataagtaaacagcgttacttactgagaaatcatcagaagcagttgctaat |
112 |
Q |
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| T |
910758 |
aaaatgatgggctatcctgaactgaagatcgttgcaaacaagcgataaaaataaacaaacagcgttacttactgagaaatcatcagaagcagttgctaat |
910659 |
T |
|
| Q |
113 |
tttcaattgtcagaccggcacctgcaaaacaaattaagttagaatcctcatatcagatcggatagaactaaaaccctgaataatttccaatttaccagtc |
212 |
Q |
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| T |
910658 |
tttcaattgtcagaccggcacctgcaaaacaaattaagttagaatc-tcatatcagatcggatagaactaaaaccctgcataatttccaatttaccagtc |
910560 |
T |
|
| Q |
213 |
aactgcagtaacttcctcgtaatgactcttcaaaatagttggttccacttgaggcttgtcaacctgatttgtaaaagtcaagttaaactacatccttact |
312 |
Q |
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| T |
910559 |
aactgcagtaacttcctcgtaatgactcttcaaaatagttggttccacttgaggcttgtcaacctgatttgtaaaagtcaagttaaactacatccttact |
910460 |
T |
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| Q |
313 |
gcaaccaaagtaccaaactttagagtagttgattgaaagtaagaaaagcaacctgccaaacatatgcttttccattactagaaccacaaacgatgttaga |
412 |
Q |
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| T |
910459 |
gcaaccaaagtaccaaactttagagtagttgattgaaagtaagaaaagcaacctgccaaacatatgcttttccattactagaaccacaaacgatgttaga |
910360 |
T |
|
| Q |
413 |
tgcatcggggctaatcgcagcctggaattgaacacatgagacagggaaaaagtcaggagtcgtgaaagaaacttgatgcaagaaattctgag |
504 |
Q |
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| T |
910359 |
tgcatcggggctaatcgcagcctggaattgaacacatgagacagggaaaaagtcaggagtcatgaaagaaacttgatgcaagaaattctgag |
910268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 43 - 503
Target Start/End: Original strand, 661223 - 661679
Alignment:
| Q |
43 |
gttgcaaacaagcgataaaaataagtaaacagcgttacttactgagaaatcatcagaagcagttgctaattttcaattgtcagaccggcacctgcaaaac |
142 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
661223 |
gttgcaaacaagcgataaaa-tatataaacagcgttacttacagagaaatcatcagaagcagttgctaattttccattgtcagaccggcacctgcaaaac |
661321 |
T |
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| Q |
143 |
aaattaagttagaatcctcatatcagatcggatagaactaaaaccctgaataatttccaatttaccagtcaactgcagtaacttcctcgtaatgactctt |
242 |
Q |
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| T |
661322 |
aaattaagttagaatc-tcgtatcagatcggatagaactaaaaccatgcctaatttccaatttaccagtcaactgcagtaacttcctcgtaatgactctt |
661420 |
T |
|
| Q |
243 |
caaaatagttggttccacttgaggcttgtcaacctgatttgtaaaagtcaagttaaactacatccttactgcaaccaaagtaccaaactttagagtagtt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| | |
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| T |
661421 |
caaaatagttggttccacttgaggcttgtcaacctgatttgtaaaagttaagttaaactacatccttaatgcaaccaaagaaccaaactttagagtagct |
661520 |
T |
|
| Q |
343 |
gattgaaagtaagaaaagcaacctgccaaacatatgcttttccattactagaaccacaaacgatgttagatgcatcggggctaatcgcagcctggaattg |
442 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
661521 |
gattgaaagtaagaaaagcaacctgccaaacatatgcttttgcattactagaaccacaaacgatgttagatgcatcggggctaatcgcagcctggaattg |
661620 |
T |
|
| Q |
443 |
aacacatgagacagggaaaaagtcaggagtcgtgaaagaaacttgatgcaagaaattctga |
503 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
661621 |
aacac--gagacagggaaaaagtcaggagtcatgaaagaaacttgatgcaagaaattctga |
661679 |
T |
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