View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17963_low_4 (Length: 499)
Name: NF17963_low_4
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17963_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 10 - 478
Target Start/End: Complemental strand, 35265068 - 35264599
Alignment:
| Q |
10 |
ataattctatttcccatgttagtgatcaattacagttgatgg-ttttagggcattcaaaaagaataaccaagaggttgaatatgctctttcctcatctgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
35265068 |
ataattctatttcccatgttagtgatcaattacagttgatgggttttagggcattcaaaaagaataactaagaggttgaatatgctctttcctcatcttc |
35264969 |
T |
|
| Q |
109 |
taagaattaactgacttttgctaccttctaatccaagttagtgaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagta |
208 |
Q |
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| T |
35264968 |
taagaattaactgacttttgctatcttctaatccaagttagtgaagaatagttggtgtagtgttataggccataccatatatcaaaatccatggctagta |
35264869 |
T |
|
| Q |
209 |
gctaccaccttgggtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagagaatttggaatcgg |
308 |
Q |
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| T |
35264868 |
gctaccaccttgggttcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaattctgatgtccttgtgacttagggaatttggaatcgg |
35264769 |
T |
|
| Q |
309 |
ttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagat |
408 |
Q |
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| T |
35264768 |
ttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaagat |
35264669 |
T |
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| Q |
409 |
ccttcttctgtaacgctgtggtttttgcttcctctgcagacttccnnnnnnncatcctatttgctgcggc |
478 |
Q |
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| T |
35264668 |
ccttcttctgtaacgctgtggtttttgcttcctctgcagacttcctttttttcatcctatttgctgcggc |
35264599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 207 - 415
Target Start/End: Complemental strand, 35272235 - 35272032
Alignment:
| Q |
207 |
tagctaccaccttgggtgcaaacccaaatttaaagcatgttcaatcaaacaagtgcttgcgaaaatt-ctgatgtccttgtgacttagagaatttggaat |
305 |
Q |
| |
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|||| ||||||| |||| |||||||||||| |||| | ||||| |||||||||||||||| |||||| | ||||||| ||||||||||| ||||||||| |
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| T |
35272235 |
tagcaaccacctcgggttcaaacccaaattcaaagaacgttcagtcaaacaagtgcttgcaaaaatttccgatgtccctgtgacttaga--atttggaat |
35272138 |
T |
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| Q |
306 |
cggttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatcttttgcatccaacttcagcttggagcaccaa |
405 |
Q |
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| T |
35272137 |
ctgttcct----ccatattacttcagctaagtatcagcaacacatatcagtgctcttcacccaactatcttttgcatccaagttcagcttggagacccaa |
35272042 |
T |
|
| Q |
406 |
gatccttctt |
415 |
Q |
| |
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|||||||||| |
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| T |
35272041 |
gatccttctt |
35272032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 35272399 - 35272253
Alignment:
| Q |
13 |
attctatttcccatgttagtgatcaattacagttgatggttt-tagggca-ttcaaaaagaataaccaagaggttgaatatgctctttcctcatctgcta |
110 |
Q |
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||||||||| |||||||||||||||||||| |||||||| || |||| || ||||||| || |||| |||||||||| | |||||||||||||||||||| |
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| T |
35272399 |
attctatttaccatgttagtgatcaattaccgttgatgggttctaggccaattcaaaaggagtaacaaagaggttgagtgtgctctttcctcatctgcta |
35272300 |
T |
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| Q |
111 |
agaattaactgacttttgctaccttctaatccaagttagtgaagaat |
157 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
35272299 |
agaattaactgacttttgctatcttctaatcaaagttagtgaagaat |
35272253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 35209480 - 35209432
Alignment:
| Q |
319 |
catatcacttcagctaagtatcagcaacacataaccctgctcttcactc |
367 |
Q |
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| T |
35209480 |
catatcacttcagctaagtatcagcagcatgtatccatgctcttcactc |
35209432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 35272004 - 35271956
Alignment:
| Q |
403 |
caagatccttcttctgtaacgctgtggtttttgcttcctctgcagactt |
451 |
Q |
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| T |
35272004 |
caagatccttcttctgtagcgctgcagtttttgcttaatctgcagactt |
35271956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 275 - 451
Target Start/End: Complemental strand, 36778578 - 36778408
Alignment:
| Q |
275 |
tgatgtccttgtgacttagagaatttggaatcggttcctttctccatatcacttcagctaagtatcagcaacacataaccctgctcttcactcaactatc |
374 |
Q |
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|||||||| ||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| |||||||| || |||||||||| |||||||| |
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| T |
36778578 |
tgatgtccctgtgacttaga--atttggaatctgttcct----ccatatcactttacctaagtatcagaaacacatatccatgctcttcacccaactatc |
36778485 |
T |
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| Q |
375 |
ttttgcatccaacttcagcttggagcaccaagatccttcttctgtaacgctgtggtttttgcttcctctgcagactt |
451 |
Q |
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|||||||||||| ||||||||||||| ||| ||||||||||||||| || || | ||||||||| ||||||||||| |
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| T |
36778484 |
ttttgcatccaagttcagcttggagccccaggatccttcttctgtagcgttgcagcttttgcttcatctgcagactt |
36778408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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