View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17963_low_5 (Length: 497)

Name: NF17963_low_5
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17963_low_5
NF17963_low_5
[»] chr5 (4 HSPs)
chr5 (15-303)||(33798935-33799216)
chr5 (59-303)||(33727656-33727901)
chr5 (311-385)||(12895044-12895118)
chr5 (311-381)||(25017535-25017606)
[»] chr3 (7 HSPs)
chr3 (311-389)||(26999203-26999282)
chr3 (319-389)||(22659740-22659811)
chr3 (311-389)||(28477544-28477623)
chr3 (334-389)||(40645832-40645887)
chr3 (332-389)||(14645778-14645835)
chr3 (332-389)||(20945189-20945246)
chr3 (333-389)||(11140856-11140912)
[»] chr8 (5 HSPs)
chr8 (311-389)||(38773214-38773293)
chr8 (332-389)||(40601928-40601985)
chr8 (313-389)||(37956275-37956352)
chr8 (332-389)||(40807899-40807956)
chr8 (333-389)||(4273855-4273911)
[»] chr6 (2 HSPs)
chr6 (331-386)||(197336-197391)
chr6 (332-389)||(3729582-3729639)
[»] chr4 (9 HSPs)
chr4 (331-389)||(37625010-37625068)
chr4 (332-389)||(46729466-46729523)
chr4 (313-389)||(51787931-51788008)
chr4 (310-389)||(54701158-54701238)
chr4 (311-389)||(31840256-31840335)
chr4 (311-389)||(38136511-38136590)
chr4 (331-389)||(31917536-31917594)
chr4 (332-389)||(22651625-22651682)
chr4 (332-389)||(43509243-43509300)
[»] chr1 (5 HSPs)
chr1 (331-389)||(44395698-44395756)
chr1 (319-389)||(9684588-9684659)
chr1 (311-389)||(16395416-16395494)
chr1 (332-389)||(24415149-24415206)
chr1 (332-389)||(51390424-51390481)
[»] chr7 (5 HSPs)
chr7 (311-389)||(33181456-33181533)
chr7 (319-378)||(37491493-37491552)
chr7 (311-389)||(19235930-19236009)
chr7 (332-385)||(5333786-5333839)
chr7 (332-389)||(18121931-18121987)
[»] chr2 (4 HSPs)
chr2 (311-389)||(28264818-28264897)
chr2 (313-389)||(3237876-3237953)
chr2 (340-385)||(11459319-11459364)
chr2 (332-389)||(41327691-41327748)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 33799216 - 33798935
Alignment:
Q  15 gatgaaataggtttac-ttgtagtttgtatagatatatgaatatgatgaatatgatttgaaactgttattgtcaatagggtttaaattattcatatacca 113  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||         |||||||||||||||| ||| ||||||||||||| |||||||||    
T  33799216 gatgaaatatgtttacgttgtagtttgtatagatatatgaatatgat---------ttgaaactgttattgttaattgggtttaaattatccatatacca 33799126  T
Q  114 tataagaggaggtgaggttccttta--acattggagggtttcgaatggaattatattatttttgaaaataatatcatattttc--tgtatttttcttttc 209  Q
    ||  |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||  ||| |||||||||||    
T  33799125 ta--agaggaggtgaggttcctttacaacattggagggtttcgaatggaattatgttattttttaaaataatatcatcttttctttgtctttttcttttc 33799028  T
Q  210 gaaatagagccttcaatattgaagaggaattgttgggaattgtggcatcacataaaaaagtgaagatcttaaatcaatgagttctatcttttta 303  Q
     ||||||||| ||||||||||||||||||||||| || ||| ||||||||||||||| |||||||||  ||| ||||||||||||||| |||||    
T  33799027 caaatagagcattcaatattgaagaggaattgttagg-attctggcatcacataaaatagtgaagattataagtcaatgagttctatcctttta 33798935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 33727901 - 33727656
Alignment:
Q  59 atgaatatgatttgaaactgttattgtcaatagggtttaaattattcatataccatataagaggaggtgaggttccttta--acattggagggtttcgaa 156  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||  |||||||||||||||||||||  ||||||||||||||||||    
T  33727901 atgaatatgatttgaaactgttattgttaattgggtttaaattatccatataccata--agaggaggtgaggttcctttacaacattggagggtttcgaa 33727804  T
Q  157 tggaattatattatttttgaaaataatatcatattttc--tgtatttttcttttcgaaatagagccttcaatattgaagaggaattgttgggaattgtgg 254  Q
    |||||||||||||||||| ||||||||||||| |||||  ||| ||||||||||| ||||||||| ||||||||||||||||||||||| || ||| |||    
T  33727803 tggaattatattattttttaaaataatatcatcttttctttgtctttttcttttccaaatagagcattcaatattgaagaggaattgttagg-attctgg 33727705  T
Q  255 catcacataaaaaagtgaagatcttaaatcaatgagttctatcttttta 303  Q
    |||||||||||| |||||||||  ||| ||||||| ||||||| |||||    
T  33727704 catcacataaaatagtgaagattataagtcaatgaattctatcctttta 33727656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 12895044 - 12895118
Alignment:
Q  311 tccgtctctatatctaagtatcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatg 385  Q
    |||||| ||||||||||| ||||||| | ||||||||| |||| ||||||| ||||||||| || ||||||||||    
T  12895044 tccgtccctatatctaagcatcatttaattttatttttgtccttaaatgtaaacctcttttcaacttattagatg 12895118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 381
Target Start/End: Original strand, 25017535 - 25017606
Alignment:
Q  311 tccgtctctatatctaagtat-catttgactttatttttatcctcaaatgtagacctctttttaaattatta 381  Q
    |||||| ||||||||||| || ||||||||||||||||| |||| ||||||| ||| | ||| |||||||||    
T  25017535 tccgtccctatatctaagcattcatttgactttatttttgtccttaaatgtaaaccccctttcaaattatta 25017606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 26999282 - 26999203
Alignment:
Q  311 tccgtctctatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||||||||  ||| |||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||    
T  26999282 tccgtctctatatctaaacatccatttgattttatttttgtcctcaaatgtaaacccctttttaaattattagatgcatt 26999203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 22659811 - 22659740
Alignment:
Q  319 tatatctaagta-tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||| || |||||||||||||||||| ||  |||||||| | |||||||||||||| ||||||||||    
T  22659811 tatatctaaatactcatttgactttatttttgtctccaaatgtaaatctctttttaaattactagatgcatt 22659740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 28477623 - 28477544
Alignment:
Q  311 tccgtctctatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||| |||||||||||  || ||||||||||||||||  ||  ||||||| ||||||||| |||||| ||||||||||    
T  28477623 tccgtccctatatctaagcctccatttgactttatttttgcccctaaatgtaaacctcttttcaaattactagatgcatt 28477544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 40645887 - 40645832
Alignment:
Q  334 tttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||||||||||  |||| || ||||| ||| |||||||||||||||||    
T  40645887 tttgactttatttttatccctaaatataaacctcctttcaaattattagatgcatt 40645832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 14645778 - 14645835
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||||||| | || ||||||| ||| |||||||||||| || |||||||    
T  14645778 catttgactttatttttgttcttaaatgtaaacccctttttaaattactatatgcatt 14645835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 20945189 - 20945246
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||||||| |||  ||||||| ||| ||||| |||||| ||||||||||    
T  20945189 catttgactttatttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 20945246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 389
Target Start/End: Complemental strand, 11140912 - 11140856
Alignment:
Q  333 atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||| |||||||||||||   |||||| ||||||||| |||||| ||||||||||    
T  11140912 atttgattttatttttatccctgaatgtaaacctcttttcaaattactagatgcatt 11140856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 38773214 - 38773293
Alignment:
Q  311 tccgtctctatatctaagta-tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||| ||||||||||| | |||||||| |||||||||||||  |||| || ||||||||| |||||||||||||||||    
T  38773214 tccgtcactatatctaagcactcatttgattttatttttatccctaaatttaaacctcttttcaaattattagatgcatt 38773293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 40601928 - 40601985
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||||||| |||| ||||||| ||||||||| |||||| ||||||||||    
T  40601928 catttgactttatttttgtccttaaatgtaaacctcttttcaaattactagatgcatt 40601985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 37956352 - 37956275
Alignment:
Q  313 cgtctctatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||| ||||||||||||||| |||||| ||||||||| |||  ||||||| ||| |||||||||||| || |||||||    
T  37956352 cgtccctatatctaagtatctatttgattttatttttgtccctaaatgtaaacccctttttaaattactaaatgcatt 37956275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 40807899 - 40807956
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||||||| |||| ||||||| ||||| ||| |||||| || |||||||    
T  40807899 catttgactttatttttgtccttaaatgtaaacctcatttcaaattactacatgcatt 40807956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 4273855 - 4273911
Alignment:
Q  333 atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||| ||||||||||| |||| ||||||| || |||||| |||||| ||||||||||    
T  4273855 atttaactttatttttgtccttaaatgtaaacttcttttcaaattactagatgcatt 4273911  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 197336 - 197391
Alignment:
Q  331 tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgc 386  Q
    |||||||||||||||||| |||| ||||||| || ||||||||||||| |||||||    
T  197336 tcatttgactttatttttgtccttaaatgtaaacttctttttaaattactagatgc 197391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 3729639 - 3729582
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||| |||||||||||| | | |||||  | ||||||||||||||||||||||||    
T  3729639 catttgattttatttttatctttatatgtaatcttctttttaaattattagatgcatt 3729582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 37625010 - 37625068
Alignment:
Q  331 tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||| ||||||||| |||  ||||||| ||||||||| |||||||||||||||||    
T  37625010 tcatttgattttatttttgtccctaaatgtaaacctcttttcaaattattagatgcatt 37625068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 46729523 - 46729466
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||| ||||||||| |||  ||||||| | |||||||||||||||||||||||||    
T  46729523 catttgattttatttttgtccctaaatgtaaatctctttttaaattattagatgcatt 46729466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 51788008 - 51787931
Alignment:
Q  313 cgtctctatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||||||||||| |||||| ||||||||| |||| |||| || ||  |||||||||||| ||||| ||||    
T  51788008 cgtctctatatctaagtatccatttgattttatttttgtccttaaatataaactcctttttaaattactagatacatt 51787931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 54701158 - 54701238
Alignment:
Q  310 ttccgtctctatatctaagta-tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||  |||||||||| | |||||||||||||||||| |||  ||||||| ||||||||| |||||| ||||| ||||    
T  54701158 ttccgtccttatatctaagcactcatttgactttatttttgtccataaatgtaaacctcttttcaaattactagatacatt 54701238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 31840335 - 31840256
Alignment:
Q  311 tccgtctctatatctaagtat-catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||| |||| |||||| || ||||||||||||||||| |||  |||| || ||| ||||| |||||||||||||||||    
T  31840335 tccgtccctatttctaagcattcatttgactttatttttgtccctaaatataaaccccttttcaaattattagatgcatt 31840256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 38136590 - 38136511
Alignment:
Q  311 tccgtctctatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||| |||| ||| ||||||||||||||||||||  ||||||| ||  ||||| |||||| ||||| ||||    
T  38136590 tccgtctctatatttaagcatccatttgactttatttttatccataaatgtaaactccttttcaaattactagatacatt 38136511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 31917594 - 31917536
Alignment:
Q  331 tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||| |||||||||||||| ||||||| |||  |||| |||||| ||||||||||    
T  31917594 tcatttgattttatttttatccttaaatgtaaaccctttttcaaattactagatgcatt 31917536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 22651682 - 22651625
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||| |||||||||||||| ||||||| ||  ||||| |||||| ||||||||||    
T  22651682 catttgattttatttttatccttaaatgtaaactccttttcaaattactagatgcatt 22651625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 43509300 - 43509243
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||||||| |||  ||||||| ||  ||||| |||||||||||||||||    
T  43509300 catttgactttatttttgtccctaaatgtaaactccttttcaaattattagatgcatt 43509243  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 44395756 - 44395698
Alignment:
Q  331 tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||| |||||||||||||| |||| || | ||||||||||||||||| |||||||    
T  44395756 tcatttgattttatttttatccttaaatataaatctctttttaaattattaaatgcatt 44395698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Original strand, 9684588 - 9684659
Alignment:
Q  319 tatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||| ||| |||||| ||||||||| |  | ||||||| ||| |||||||||||||||||||||||    
T  9684588 tatatctaagcatccatttgattttatttttgttattaaatgtaaacccctttttaaattattagatgcatt 9684659  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 16395416 - 16395494
Alignment:
Q  311 tccgtctctatatctaagta-tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||||||||| | | |||||||||||||||| | |  ||||| | | |||||||||||||||||||||||||    
T  16395416 tccgtctctatatctaagcatttatttgactttatttttgttcgtaaatgca-aactctttttaaattattagatgcatt 16395494  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 24415206 - 24415149
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||||||||||||| |||| || | | | |||||||||| ||||||||||    
T  24415206 catttgactttatttttatccttaaatataaatccccttttaaattactagatgcatt 24415149  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 51390424 - 51390481
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||| |||| |||  ||||||| ||| |||||||||||| ||||||||||    
T  51390424 catttgactttaattttgtccctaaatgtaaacccctttttaaattactagatgcatt 51390481  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 33181533 - 33181456
Alignment:
Q  311 tccgtctctatatctaagta-tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||||||||||  |||||||||||||||||| |||  ||||||| ||  | ||| |||||||||||||||||    
T  33181533 tccgtctctatatctaagtcctcatttgactttatttttgtccataaatgtaaac--cctttcaaattattagatgcatt 33181456  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 37491493 - 37491552
Alignment:
Q  319 tatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaatta 378  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| | ||||||||||||||    
T  37491493 tatatctaagcatctatttgactttatttttatccttaaatgta-aactctttttaaatta 37491552  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 19235930 - 19236009
Alignment:
Q  311 tccgtctctatatctaagta-tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||| ||||||||||| | |||||||||||||||||| |||  ||||||| ||  ||||| |||||| ||||||||||    
T  19235930 tccgtccctatatctaagcactcatttgactttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 19236009  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 385
Target Start/End: Original strand, 5333786 - 5333839
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatg 385  Q
    ||||||||||||||||| |||  ||||||| ||| |||||||||||| ||||||    
T  5333786 catttgactttatttttgtccctaaatgtaaacccctttttaaattactagatg 5333839  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 18121931 - 18121987
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||||||| |||  ||||||| ||| |||||||||||| ||||||||||    
T  18121931 catttgactttatttttgtccctaaatgtaaacc-ctttttaaattactagatgcatt 18121987  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 28264818 - 28264897
Alignment:
Q  311 tccgtctctatatctaagta-tcatttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||||||||||||||||  | |||| ||| ||||||||| ||||  |||||| ||||||||| |||||| ||||||||||    
T  28264818 tccgtctctatatctaaacactcatctgattttatttttgtcctttaatgtaaacctcttttcaaattactagatgcatt 28264897  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 3237953 - 3237876
Alignment:
Q  313 cgtctctatatctaagtatc-atttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    |||| ||||||||||| ||| |||||| ||||||||| |||  ||||||| ||  |||||||||||| ||||||||||    
T  3237953 cgtccctatatctaagcatccatttgattttatttttgtccctaaatgtaaactcctttttaaattactagatgcatt 3237876  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 11459364 - 11459319
Alignment:
Q  340 tttatttttatcctcaaatgtagacctctttttaaattattagatg 385  Q
    |||||||||||||| |||| || | |||||||||||||||||||||    
T  11459364 tttatttttatccttaaatataaatctctttttaaattattagatg 11459319  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 41327691 - 41327748
Alignment:
Q  332 catttgactttatttttatcctcaaatgtagacctctttttaaattattagatgcatt 389  Q
    ||||||||||||||||| |||  ||||||| | ||||||| |||||| ||||||||||    
T  41327691 catttgactttatttttgtccataaatgtaaatctcttttcaaattactagatgcatt 41327748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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