View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17963_low_8 (Length: 317)

Name: NF17963_low_8
Description: NF17963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17963_low_8
NF17963_low_8
[»] chr3 (12 HSPs)
chr3 (18-304)||(9343552-9343839)
chr3 (18-199)||(9448127-9448308)
chr3 (91-178)||(9329670-9329757)
chr3 (94-187)||(9495009-9495102)
chr3 (81-187)||(9617647-9617753)
chr3 (81-187)||(41985456-41985562)
chr3 (91-176)||(9336376-9336461)
chr3 (91-179)||(16011844-16011935)
chr3 (127-187)||(9432712-9432772)
chr3 (91-180)||(9395109-9395198)
chr3 (81-185)||(41980684-41980788)
chr3 (94-142)||(9695838-9695886)
[»] chr1 (2 HSPs)
chr1 (83-218)||(4439651-4439786)
chr1 (83-180)||(4428460-4428557)
[»] chr2 (1 HSPs)
chr2 (82-181)||(20694463-20694562)
[»] chr6 (4 HSPs)
chr6 (91-218)||(213255-213382)
chr6 (100-179)||(7041341-7041420)
chr6 (100-179)||(7025580-7025659)
chr6 (100-179)||(7012644-7012723)
[»] chr8 (1 HSPs)
chr8 (81-197)||(13170820-13170936)
[»] chr7 (2 HSPs)
chr7 (91-179)||(450315-450403)
chr7 (92-169)||(3679911-3679988)
[»] chr5 (1 HSPs)
chr5 (119-211)||(33541422-33541514)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 9343839 - 9343552
Alignment:
Q  18 cctagaggaaattgtgttgtctttacttatggtggcgacttcctgtattttagaaagatgtggtgtgggaactgtgtttttcacttggatcaaggtcggc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  9343839 cctagaggaaattgtgttgtctttacttatggtggcgacttcctgtattttagaaagatgtggtgtggaaactgtgtttttcacatggatcaaggtcggc 9343740  T
Q  118 tttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgtcaaaagttgcctttgtaactaagtaagttatcttgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9343739 tttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccggagtggatcgtcaaaagttgcctttgtaactaagtaagttatcttgc 9343640  T
Q  218 aactagttcgt-ttgaaatgatcttatacttgggcagagatttcctaaagaatacattcttgtataagtgaaatttgcatgtgccttc 304  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9343639 aactagttcgtattgaaatgatcttatatttgggcagagatttcctaaagaatacattcttgtataagtgaaatttgcatgtgccttc 9343552  T

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Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 9448308 - 9448127
Alignment:
Q  18 cctagaggaaattgtgttgtctttacttatggtggcgacttcctgtattttagaaagatgtggtgtgggaactgtgtttttcacttggatcaaggtcggc 117  Q
    |||||||||||||| |||||||||||| ||||| ||||||||| |||||||| ||| |||||||||||||| ||||||||| ||||||||||||| | ||    
T  9448308 cctagaggaaattgcgttgtctttactgatggtagcgacttccagtattttaaaaacatgtggtgtgggaattgtgttttttacttggatcaaggcctgc 9448209  T
Q  118 tttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgtcaaaagttgcctttgtaa 199  Q
    |||||||| |||||||||| ||||||  ||| | ||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  9448208 tttcacctttgtctgattgccctgaaattttgaacttgttctggccacctccagagtggatcgtccaaagtagccttcgtaa 9448127  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 9329757 - 9329670
Alignment:
Q  91 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggat 178  Q
    |||||||||||||||||||||||| |  ||||||| |||| |||| |||||||||||| |  ||||||||||||||||||||||||||    
T  9329757 gtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcctgaatatttcaagttgttctggccacctccagagtggat 9329670  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 9495009 - 9495102
Alignment:
Q  94 tttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgtcaaaag 187  Q
    ||||| |||||| | |||||||| |||| ||| ||| ||| |||||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  9495009 tttttgacttggttgaaggtcgggtttcgcctttgtgtgactgtcctgaatattttaacttgttctggccacctccggattggatcgtcaaaag 9495102  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 9617647 - 9617753
Alignment:
Q  81 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcg 180  Q
    ||||||||  |||| ||||| ||||||||||||||||||||  || |||||  || ||||||||| || | |||||||||||||||||| || ||||||     
T  9617647 tgtgggaatcgtgtctttcatttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgttctggccacctccggattggatct 9617746  T
Q  181 tcaaaag 187  Q
    |||||||    
T  9617747 tcaaaag 9617753  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 41985562 - 41985456
Alignment:
Q  81 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcg 180  Q
    |||||||  ||||||||||||||||||||| || || |||| ||| ||||||||| |||||| || |  |||| ||| ||||||||||| || |||||||    
T  41985562 tgtgggatgtgtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatcg 41985463  T
Q  181 tcaaaag 187  Q
    |||||||    
T  41985462 tcaaaag 41985456  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 9336461 - 9336376
Alignment:
Q  91 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtgg 176  Q
    |||||||||||||||||||||||| |  ||||||| |||| |||| ||| |||||||| |  ||||||||||||||||||| ||||    
T  9336461 gtgtttttcacttggatcaaggtcaggcttcacctttgtcggattatcccgaatatttcaagttgttctggccacctccagcgtgg 9336376  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 16011844 - 16011935
Alignment:
Q  91 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttc---tggccacctccagagtggatc 179  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| ||| || ||| ||| ||| |||   |||||||||||| ||||||||    
T  16011844 gtgtttttcacttggatcaaggtcggatttcacctttgtctgattatccagattatgttaacttattcttatggccacctccaaagtggatc 16011935  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 9432772 - 9432712
Alignment:
Q  127 tgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgtcaaaag 187  Q
    ||||||||| |||||||||||  | |||||||||||||||||| |||||||||||||||||    
T  9432772 tgtctgattatcctgaatattacaacttgttctggccacctccggagtggatcgtcaaaag 9432712  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 9395198 - 9395109
Alignment:
Q  91 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcg 180  Q
    ||||||||||||||||||| |||||| |||| ||||||||||| | ||||||  |||| |   ||||| |||| ||||||||||||||||    
T  9395198 gtgtttttcacttggatcagggtcggatttcccctctgtctgactatcctgatcatttgaagatgttcgggccgcctccagagtggatcg 9395109  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 41980788 - 41980684
Alignment:
Q  81 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcg 180  Q
    |||||||  ||| ||||||||||||||||||||||  |||| ||| |||| |||| ||||||||| |  | ||||||  |||||||||| || |||||||    
T  41980788 tgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtccgattatcctgaatactacaacttgttagggccacctccggaatggatcg 41980689  T
Q  181 tcaaa 185  Q
    |||||    
T  41980688 tcaaa 41980684  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 9695838 - 9695886
Alignment:
Q  94 tttttcacttggatcaaggtcggctttcacctctgtctgattgtcctga 142  Q
    ||||||||||||||||||||||| |||||||| |||||| || ||||||    
T  9695838 tttttcacttggatcaaggtcgggtttcacctttgtctggttatcctga 9695886  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 218
Target Start/End: Complemental strand, 4439786 - 4439651
Alignment:
Q  83 tgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgtc 182  Q
    |||||||||||||||| |||||||||||||   |||||| ||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |    
T  4439786 tgggaactgtgtttttgacttggatcaaggaaagctttcgcctttgtctgattgtcctgactattttaacttgttctggccacctgcagagtggatcggc 4439687  T
Q  183 aaaagttgcctttgtaactaagtaagttatcttgca 218  Q
     || ||||| ||  ||| | |||| |||||||||||    
T  4439686 gaatgttgcgttcctaaatgagtatgttatcttgca 4439651  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 4428557 - 4428460
Alignment:
Q  83 tgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcg 180  Q
    |||||||||||||||| ||||||||||| | | |||| | ||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  4428557 tgggaactgtgtttttgacttggatcaacgccagcttacgcctttgtctgattgtccggaatattttaacttgttctggccacctacagagtggatcg 4428460  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 20694463 - 20694562
Alignment:
Q  82 gtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgt 181  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| |||| |||| |||||||||||||| |||||||||||| ||||| |||||||||||    
T  20694463 gtggtaactgtgttttccatttggatcaagatcggctttcacctttgtccgattatcctgaatattttaacttgttctggcctcctcctgagtggatcgt 20694562  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 213255 - 213382
Alignment:
Q  91 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgtcaaaagttg 190  Q
    ||||||| ||||||||||||||||| |||||| || ||||| ||| |||||||| ||  | |||||||||||||||||| ||||||||||||||||| ||    
T  213255 gtgttttgcacttggatcaaggtcgactttcatctgtgtctaattctcctgaattttccaacttgttctggccacctcccgagtggatcgtcaaaagctg 213354  T
Q  191 cctttgtaactaagtaagttatcttgca 218  Q
      || |||| | |||| |||||||||||    
T  213355 aattcgtaagtgagtatgttatcttgca 213382  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 7041420 - 7041341
Alignment:
Q  100 acttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatc 179  Q
    |||||||||||||||||| ||| ||||| ||||||| |||||||||||  | ||||||||||||||||||| ||||||||    
T  7041420 acttggatcaaggtcggcattcgcctctatctgattatcctgaatattccaacttgttctggccacctccaaagtggatc 7041341  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 7025659 - 7025580
Alignment:
Q  100 acttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatc 179  Q
    ||||||||| |||||||| ||| | | |||| |||| |||||||||||  | ||||||||||||||||||||||||||||    
T  7025659 acttggatctaggtcggcattcgcttttgtccgattatcctgaatattccaacttgttctggccacctccagagtggatc 7025580  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 7012723 - 7012644
Alignment:
Q  100 acttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatc 179  Q
    |||||||||||||||| | ||| | | ||||||||||||| |||||||  | |||||| ||||||||| |||||||||||    
T  7012723 acttggatcaaggtcgacattcgcttttgtctgattgtcccgaatattccaacttgttatggccacctgcagagtggatc 7012644  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 13170820 - 13170936
Alignment:
Q  81 tgtgggaactgtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcg 180  Q
    |||||||  ||||||||||||||||||||| | |||||||| ||| | ||||||||||| || || || | |||||| |||||||||||||| |||||||    
T  13170820 tgtgggatgtgtgtttttcacttggatcaatgccggctttcccctttatctgattgtcccgagtacttcaacttgttttggccacctccagaatggatcg 13170919  T
Q  181 tcaaaagttgcctttgt 197  Q
    |||| || ||| |||||    
T  13170920 tcaacagctgcatttgt 13170936  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 450315 - 450403
Alignment:
Q  91 gtgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatc 179  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| ||| || ||||| |  |||||||||||||||||||| ||||||    
T  450315 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatccggattatttcaagttgttctggccacctccagattggatc 450403  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 3679988 - 3679911
Alignment:
Q  92 tgtttttcacttggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctcc 169  Q
    |||||| ||||||||| |||||||| |||| | | ||||||||  | |||||||||| | ||| ||||||||||||||    
T  3679988 tgttttgcacttggatgaaggtcggatttcgcttatgtctgatgatgctgaatatttcagcttattctggccacctcc 3679911  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 33541514 - 33541422
Alignment:
Q  119 ttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccagagtggatcgtcaaaagttgcctttgtaactaagtaagtta 211  Q
    ||||||| |||| |||| ||| |||||||| | |||||||  ||  ||||||||||||||||||||||| ||| || |||||| |||| ||||    
T  33541514 ttcacctttgtccgattatccggaatatttcaacttgttcccgcagcctccagagtggatcgtcaaaagctgcattcgtaactgagtatgtta 33541422  T

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