View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_high_13 (Length: 424)
Name: NF17964_high_13
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 25345732 - 25345522
Alignment:
| Q |
15 |
aaatacatcttttctaacaataagcaattatataagctaagtacatacctacatatgcacttctgtgaaaatattctatgctatgctgac-nnnnnnntt |
113 |
Q |
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| T |
25345732 |
aaatacatcttttctaacaataagcaattatataagctaagtacatacctacatatgcacttctgtgaaaatattctatgctatgctgacaaaaaaaatt |
25345633 |
T |
|
| Q |
114 |
ccactagttgagtgggtttgatatggtaagatttaaaggacatgacatttggtttattcggccagcaagagtannnnnnncatcaaatttggggtcttca |
213 |
Q |
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| T |
25345632 |
ccactagttgagtgggtttgatatggtaagatttaaaggacatgacatttggtttatttggccagcaagagtatttttttcatcaaatttggggtattca |
25345533 |
T |
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| Q |
214 |
catattcagat |
224 |
Q |
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||||||||||| |
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| T |
25345532 |
catattcagat |
25345522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 216 - 378
Target Start/End: Complemental strand, 25345339 - 25345177
Alignment:
| Q |
216 |
tattcagatttgaatgcagtaaaggtccacatgccagggtgatcattgaagcaattgaccaagagcagaagctgtagcttgaactttgaaccacatatgt |
315 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25345339 |
tattcggatttgaatgcagtacaggtccacatgccagggtgatcattgaagcaattgaccaagagcagaagctgtagcttgaactttgaaccacatatgt |
25345240 |
T |
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| Q |
316 |
tacttctcgttgtagatttctaattgcatttatttattatattttacacaagataaaatttaa |
378 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
25345239 |
tacttctcgttgtagatttctaattgcattgttttattatattttacacaagataaagtttaa |
25345177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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