View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_high_20 (Length: 347)
Name: NF17964_high_20
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 22940637 - 22940430
Alignment:
| Q |
18 |
tattcacagtggccaattccacaagaaggaaagggagaaaaactaaataatgtgacactggctgtaatgaaatttatttgatgctttgagtataccttaa |
117 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |
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| T |
22940637 |
tattcacagtggtcaattccacaagaaggaaagggagaaaaactaaataatgtgacactagctataatgaaatttatctgatgctttgagtataccttaa |
22940538 |
T |
|
| Q |
118 |
gaataagaaaaactaaactgatacaacatgatgacaaatctcaattacttagtttattcttgttatactctatcccgacccatggctggtggttatctgt |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22940537 |
gaataagaaaaactaaactgatacaacatgatgacaaatctcaattacttagtttattcttgttatactctatcccgacccatggctgctggttatctgt |
22940438 |
T |
|
| Q |
218 |
caagctgt |
225 |
Q |
| |
|
|||||||| |
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|
| T |
22940437 |
caagctgt |
22940430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 27287364 - 27287571
Alignment:
| Q |
18 |
tattcacagtggccaattccacaagaaggaaagggagaaaaactaaataatgtgacactggctgtaatgaaatttatttgatgctttgagtataccttaa |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |
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| T |
27287364 |
tattcacagtggtcaattccacaagaaggaaagggagaaaaactaaataatgtgacactagctataatgaaatttatctgatgctttgagtataccttaa |
27287463 |
T |
|
| Q |
118 |
gaataagaaaaactaaactgatacaacatgatgacaaatctcaattacttagtttattcttgttatactctatcccgacccatggctggtggttatctgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27287464 |
gaataagaaaaactaaactgatacaacatgatgacaaatctcaattacttagtttattcttgttatactctatcccgacccatggctgctggttatctgt |
27287563 |
T |
|
| Q |
218 |
caagctgt |
225 |
Q |
| |
|
|||||||| |
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|
| T |
27287564 |
caagctgt |
27287571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 16483361 - 16483240
Alignment:
| Q |
18 |
tattcacagtggccaattccacaagaaggaaagggagaaaaactaaataatgtgacactggctgtaatgaaatttatttgatgctttgagtataccttaa |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
16483361 |
tattcagagtggccaattccacaagaaggaaagggagaaaaactaaataatgtgacacag-ctgtaatgaaatttatctgatgctttgagtataccttaa |
16483263 |
T |
|
| Q |
118 |
gaataagaaaaactaaactgata |
140 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
16483262 |
gaataagaaaaactaaactgata |
16483240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 15276803 - 15276689
Alignment:
| Q |
22 |
cacagtggccaattccacaagaaggaaagggagaaaaactaaataatgtgacactggctgtaatgaaatttatttgatgctttgagtataccttaagaat |
121 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||| ||||||||||||| || | || | ||||||||||||||| || |||||||||||||||||| | |
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|
| T |
15276803 |
cacagtggccaattccacgagaagcagagagaggaaaactaaataatatggctctagttgtaatgaaatttatccgagactttgagtataccttaaggac |
15276704 |
T |
|
| Q |
122 |
aagaaaaactaaact |
136 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
15276703 |
aagcaaaactaaact |
15276689 |
T |
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