View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_high_25 (Length: 310)
Name: NF17964_high_25
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 31571470 - 31571174
Alignment:
| Q |
1 |
atgatatgatcttgacactacnnnnnnncggtagagatttttactgcagtaaatccattccaacgaacagaataggaagagaaattataaaacgataatg |
100 |
Q |
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| T |
31571470 |
atgatatgatcttgacactacaaaaaaacggtagagatttttactgcagtaaatccattccaacgaacagaataggaagagaaattataaaacgataatg |
31571371 |
T |
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| Q |
101 |
gttgaaaatttgaaaagaaatcaaggacattcttgacaatctagggtctaaccgaaaacttatgggattttttcatattttggaccttgtacgatgaaac |
200 |
Q |
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| T |
31571370 |
gttgaaaatttgaaaagaaatcaaggacattcttgacaatctagggtctaaccgaaaacttatgggattttttcatattttggaccttgtacgatgaaac |
31571271 |
T |
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| Q |
201 |
tcatcaaagtgtgaaaaatattctattcaatgcataagtgg-nnnnnnnnccttaactaatatctcaagtgaaaatgttaacatgactcttattttt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31571270 |
tcatcaaagtgtgaaaaatattctattcaatgcataagtggtttttttttccttaactaatatctcaagtgaaaatgttaacatgactcttattttt |
31571174 |
T |
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