View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17964_high_3 (Length: 614)
Name: NF17964_high_3
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 5 - 597
Target Start/End: Original strand, 3461176 - 3461769
Alignment:
| Q |
5 |
gagttcaaaccc-aactgaaataatctttggttgagttttactgacctcagccgaattcaaaacgactagtgtctgttttccttagaaaccggagggtta |
103 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3461176 |
gagttcaaatcctaactgaaataatctttggttgagttttactgacctcagccgaattcaaaactactagtgtctgttttccttagaaaccggagggtta |
3461275 |
T |
|
| Q |
104 |
agacaaaatagaattagaaacccagatagaaaatgacgatctttgtttattataatgctatgagcctcattttctgaaaattgctattcaatcactataa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3461276 |
agacaaaatagaattagaaacccagatagaaaatgacgatctttgtttattataatgctatgagcctcattttctgaaaattgctattcaatcactataa |
3461375 |
T |
|
| Q |
204 |
caatacaagaattacactcatgcctttcgcctatgaaaaattagacgacaagacagctagagaaatcagtgcactactacacaacacagtaagggactca |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3461376 |
caatacaagaattacactcatgcctttcgcctatgaaaaattagacgacaagacagctagagaaatcagtgcactactacacaacacagtaagggactca |
3461475 |
T |
|
| Q |
304 |
ttgttgggatcattttgtagaaaatatgttactaaaacaagttgtgtagagaatgggtcgcgatctttcatatttannnnnnnngtatagatatgtggac |
403 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
3461476 |
ttgttgggatcattttgcagaaaatatgttactaaaacaagttgtgtagagaatgggccgcgatctttcatatttattttttttgtatagatatgtggac |
3461575 |
T |
|
| Q |
404 |
atttataacgaatcatcactagagttttcaccaatagatatacttgatgatgaataccctgtattagcaggaccaaacaataattccaggcagaaagtag |
503 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3461576 |
atttataatgaatcatcactagagttttcaccaatagatatacttgatgatgaataccctgtattagcaggaccaaacaataattccaggcagaaagtag |
3461675 |
T |
|
| Q |
504 |
ggccacatattgatcttcctttcttcccaactttgtccaattcatttactgtgagctgcaaaaagaaatagttacaaaagtgaacacagtcagt |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3461676 |
ggccacatattgatcttcctttcttcccaactttgtccaattcatttactgtgagctgcaaaaagaaatagttacaaaagtgaacacagtcagt |
3461769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University