View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17964_high_32 (Length: 267)

Name: NF17964_high_32
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17964_high_32
NF17964_high_32
[»] chr1 (6 HSPs)
chr1 (18-266)||(43011429-43011678)
chr1 (31-87)||(50150062-50150118)
chr1 (18-83)||(38863434-38863500)
chr1 (31-82)||(14998509-14998560)
chr1 (31-81)||(47215499-47215549)
chr1 (35-92)||(46879050-46879107)
[»] chr3 (3 HSPs)
chr3 (18-87)||(34020543-34020613)
chr3 (18-83)||(7944225-7944291)
chr3 (18-83)||(19647627-19647693)
[»] chr5 (3 HSPs)
chr5 (18-83)||(14136435-14136501)
chr5 (18-83)||(27514240-27514305)
chr5 (31-83)||(11782211-11782263)
[»] chr8 (3 HSPs)
chr8 (18-83)||(42146062-42146128)
chr8 (18-83)||(31664852-31664918)
chr8 (35-83)||(27562647-27562695)
[»] chr6 (2 HSPs)
chr6 (18-81)||(18058399-18058463)
chr6 (18-83)||(30452834-30452900)
[»] chr2 (1 HSPs)
chr2 (31-78)||(7000494-7000541)
[»] chr4 (4 HSPs)
chr4 (18-83)||(33748269-33748335)
chr4 (18-83)||(54453868-54453934)
chr4 (35-80)||(52488655-52488700)
chr4 (31-79)||(42057945-42057993)
[»] scaffold0060 (1 HSPs)
scaffold0060 (31-83)||(60563-60615)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 43011678 - 43011429
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatacgtaatcttgttggagtatattgtagttttattt 116  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  43011678 catatgatccaacggtacaaaaaactggtccatcttagaccaatatttttccaggttcattttatacgtaaccttgttagagtatattgtagttttattt 43011579  T
Q  117 tacttgaatacctttggatttgctttgcagtgtacgcattttgagttttggacacattcaaaatcatggttatatacttattttagttcaaatgtaaaaa 216  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  43011578 tacttgaatacctttggatttgctttgcagtgtatgcattttgagttttggacacattcaaaatcatggttatatacttattttagttcaaatgtaggaa 43011479  T
Q  217 tcatttagatttaagaatatatgtttgtaataaaatgatccctatgcttc 266  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  43011478 tcatttagatttaagaatatatttttgtaataaaatgatcccaatgcttc 43011429  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 50150118 - 50150062
Alignment:
Q  31 gtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatacgtaa 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50150118 gtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatacgtaa 50150062  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 38863500 - 38863434
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| ||||||||| |||||||||||||| | |||||||||||||||    
T  38863500 catatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 38863434  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 14998560 - 14998509
Alignment:
Q  31 gtacaaaaaactggtccatcttagaccaatattttcacaggttcattttata 82  Q
    |||||||||| ||||||||| | |||||||||||| | ||||||||||||||    
T  14998560 gtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 14998509  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 47215549 - 47215499
Alignment:
Q  31 gtacaaaaaactggtccatcttagaccaatattttcacaggttcattttat 81  Q
    |||||||||| ||||||||| | |||||||||||| | |||||||||||||    
T  47215549 gtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 47215499  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 46879107 - 46879050
Alignment:
Q  35 aaaaaactggtccatcttagaccaatattttcacaggttcattttatacgtaatcttg 92  Q
    |||||| | ||||||| | ||||||||||||||  ||||||||||||||| |||||||    
T  46879107 aaaaaattagtccatcatggaccaatattttcatgggttcattttatacgaaatcttg 46879050  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 34020613 - 34020543
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatacgtaa 87  Q
    |||||||| ||||| |||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  34020613 catatgattcaatggtacaaaaaactggtccattttaaaccaatattttcacatgttcattttatacgtaa 34020543  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 7944291 - 7944225
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| ||||||||| |  ||||||||||| | |||||||||||||||    
T  7944291 catatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcattttatac 7944225  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 19647693 - 19647627
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||  ||||||||| | |||||||||||| | |||||||||||||||    
T  19647693 catatgatctaatggtacaaaaatttggtccatcatggaccaatatttttataggttcattttatac 19647627  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 14136435 - 14136501
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| ||||||||| |||||||||||||| | |||||||||||||||    
T  14136435 catatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcattttatac 14136501  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 27514240 - 27514305
Alignment:
Q  18 catatgatccaatgtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |  |||||||||| ||||||||| | |||||||||||| | |||||||||||||||    
T  27514240 catatgatctatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 27514305  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 11782211 - 11782263
Alignment:
Q  31 gtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    |||||||||| ||||||||| | |||||||||||| | |||||||||||||||    
T  11782211 gtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 11782263  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 42146128 - 42146062
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| ||||||||| | |||||||||||| | |||||||||||||||    
T  42146128 catatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 42146062  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 31664852 - 31664918
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| || |||||| | |||||||||||| | |||||||||||||||    
T  31664852 catatgatctaatggtacaaaaaattgttccatcatggaccaatatttttataggttcattttatac 31664918  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 27562647 - 27562695
Alignment:
Q  35 aaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    |||||| | ||||||| |||||||||||||| | |||||||||||||||    
T  27562647 aaaaaattagtccatcatagaccaatatttttataggttcattttatac 27562695  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 18058463 - 18058399
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttat 81  Q
    ||||||||| |||| ||||||||| ||||||||| | |||||||||||| | |||||||||||||    
T  18058463 catatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 18058399  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 30452834 - 30452900
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| ||||||||| |||||||||||| | | ||||| |||||||||    
T  30452834 catatgatctaatggtacaaaaaattggtccatcatagaccaatattattataggtttattttatac 30452900  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 7000494 - 7000541
Alignment:
Q  31 gtacaaaaaactggtccatcttagaccaatattttcacaggttcattt 78  Q
    |||||||||| ||||||||| |||||||||||||||| | ||||||||    
T  7000494 gtacaaaaaattggtccatcatagaccaatattttcatatgttcattt 7000541  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 33748269 - 33748335
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| ||||||||| |  ||||||||||| | |||||||||||||||    
T  33748269 catatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcattttatac 33748335  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 54453934 - 54453868
Alignment:
Q  18 catatgatccaatg-tacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    ||||||||| |||| ||||||||| || |||||| || ||||||||||| | |||||||||||||||    
T  54453934 catatgatctaatggtacaaaaaattgatccatcataaaccaatatttttataggttcattttatac 54453868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 52488700 - 52488655
Alignment:
Q  35 aaaaaactggtccatcttagaccaatattttcacaggttcatttta 80  Q
    |||||| |||||||||||||||||||||| ||| || |||||||||    
T  52488700 aaaaaattggtccatcttagaccaatattctcatagattcatttta 52488655  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 42057945 - 42057993
Alignment:
Q  31 gtacaaaaaactggtccatcttagaccaatattttcacaggttcatttt 79  Q
    |||||||||| ||||||||| || ||||||||||| | |||||||||||    
T  42057945 gtacaaaaaattggtccatcataaaccaatatttttataggttcatttt 42057993  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 60615 - 60563
Alignment:
Q  31 gtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 83  Q
    |||||||||| ||||||||| ||||  |||||||| | |||||||||||||||    
T  60615 gtacaaaaaattggtccatcatagattaatatttttataggttcattttatac 60563  T

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