View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_high_44 (Length: 228)
Name: NF17964_high_44
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 14430386 - 14430584
Alignment:
| Q |
15 |
aaaatatgatatgctactatacaaaaattacaaaaaaccaaatttgatgtcacaa-catgagttatattatatatcaaaagttaaatacaaattcatgtt |
113 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14430386 |
aaaatatgatatgctactatacaaaaattaaaaaaaaccaaatttgatgtcacaaacatgagttatattatatatcaaaagttaaatacaaattcatgtt |
14430485 |
T |
|
| Q |
114 |
agcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaacagataccaaaagtgaaatgatgctaacaagacatgaattaaaaatcaaaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
14430486 |
agcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaacagataccaaaagtgaaatgatagtaacaagagatgaattaaaaatcaaaac |
14430584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 44184018 - 44183981
Alignment:
| Q |
96 |
taaatacaaattcatgttagcttcaatatgaaacacca |
133 |
Q |
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| T |
44184018 |
taaatacaaattcaggttagcttcaatctgaaacacca |
44183981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 30663692 - 30663628
Alignment:
| Q |
96 |
taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaa |
160 |
Q |
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|||||||||||||| |||||||||||| | |||||||| ||||||||||| |||| ||| ||||| |
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| T |
30663692 |
taaatacaaattcaagttagcttcaatctaaaacaccaaaaagcatcctcaaaattaaaaaaaaa |
30663628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 22855101 - 22855165
Alignment:
| Q |
96 |
taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaa |
160 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||| |||| |||||| |||| ||||||||| |
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|
| T |
22855101 |
taaatacaaattctggttagcttcaatctgaaacaccaaaaagtatcctcaaaataaaataaaaa |
22855165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 14135941 - 14135989
Alignment:
| Q |
96 |
taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcct |
144 |
Q |
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|||||||||||||| |||||||| ||| |||||||||| |||||||||| |
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| T |
14135941 |
taaatacaaattcaggttagcttaaatttgaaacaccaaaaagcatcct |
14135989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 35336713 - 35336658
Alignment:
| Q |
95 |
ttaaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaat |
150 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||| |
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|
| T |
35336713 |
ttaaatacaaattcaaattagcttcaatttgaaacaccaaaaagcatcctcaaaat |
35336658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 34126347 - 34126409
Alignment:
| Q |
96 |
taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaa |
158 |
Q |
| |
|
||||||||||||||||||| ||||||| | |||||||| | ||||| ||| |||| ||||||| |
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|
| T |
34126347 |
taaatacaaattcatgttaccttcaatttaaaacaccaaatagcattctcaaaataaaataaa |
34126409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2297384 - 2297330
Alignment:
| Q |
96 |
taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaat |
150 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||| ||||||||||| |||| |
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|
| T |
2297384 |
taaatacaaattcaaattagctttaatctgaaacaccaaaaagcatcctcaaaat |
2297330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 40418432 - 40418472
Alignment:
| Q |
91 |
aaagttaaatacaaattcatgttagcttcaatatgaaacac |
131 |
Q |
| |
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||||||||||||||||||| | |||||||||| |||||||| |
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| T |
40418432 |
aaagttaaatacaaattcaagctagcttcaatctgaaacac |
40418472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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