View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17964_high_6 (Length: 534)
Name: NF17964_high_6
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17964_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 6798163 - 6798245
Alignment:
| Q |
24 |
caaataaatttcaattcactttcagccatttcagtgtgcaaatttgaggatgaacaaatcaattttttgggaagactaagaaa |
106 |
Q |
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| T |
6798163 |
caaataaatttcaattcactttcagtcatttcagtgttcaaatttgaggatgaacaaatcaattttttgggaagactatgaaa |
6798245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 394 - 526
Target Start/End: Original strand, 6798852 - 6798986
Alignment:
| Q |
394 |
gcttcaataattcgaaccgtcttttaacattccattgat--tcaacatttgcttgatttgtgatcaggtattaaaacttcaaaaagggacagagtgaata |
491 |
Q |
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| T |
6798852 |
gcttcaataatgtgaaccgccttttaatattccattaaaaatcatcatttgtttgatttgtgattcggtatgaacacttaaaaaagggacacaatgcata |
6798951 |
T |
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| Q |
492 |
gaagtatttctgaacaaggatgtcttcggaagaca |
526 |
Q |
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| T |
6798952 |
gaagtatttctgaacaaggatgtcttctgaagaca |
6798986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 414 - 526
Target Start/End: Original strand, 6859708 - 6859820
Alignment:
| Q |
414 |
cttttaacattccattgattcaacatttgcttgatttgtgatcaggtattaaaacttcaaaaagggacagagtgaatagaagtatttctgaacaaggatg |
513 |
Q |
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| T |
6859708 |
cttttcacgttccatcgattcgataattgcttgatttgtgatcaggtatgaaaacttcaaaaaaggacacagatcatagaagtatttttgaacaaggatg |
6859807 |
T |
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| Q |
514 |
tcttcggaagaca |
526 |
Q |
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| T |
6859808 |
tcgtctgaagaca |
6859820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 430 - 526
Target Start/End: Original strand, 8573181 - 8573275
Alignment:
| Q |
430 |
gattcaacatttgcttgatttgtgatcaggtattaaaacttcaaaaagggacagagtgaatagaagtatttctgaacaaggatgtcttcggaagaca |
526 |
Q |
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| T |
8573181 |
gattcaataattgcttgatttgtaatcaggtatgaaaacttcaaaaaaggac--agttcatagaagtatttctgaacaaggatgtcgtctgaagaca |
8573275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 7746628 - 7746532
Alignment:
| Q |
430 |
gattcaacatttgcttgatttgtgatcaggtattaaaacttcaaaaagggacagagtgaatagaagtatttctgaacaaggatgtcttcggaagaca |
526 |
Q |
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| T |
7746628 |
gattcaacatttgcttgatttgttatcgggtatgaaaaccacaaaaatggacacagtttagagaagtattttttaacaagaatgtcatctgaagaca |
7746532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 6934712 - 6934625
Alignment:
| Q |
25 |
aaataaatttcaattcactttcagccatttcagtgtgcaaatttgaggatgaac-aaatcaa-ttttttgggaagactaagaaaatga |
110 |
Q |
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| T |
6934712 |
aaataaatttcagttcactttcagctgttttagtgtccaaatttgagattgaacaaaatcaatttttttgggaagactatgcaaatga |
6934625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 6940203 - 6940142
Alignment:
| Q |
271 |
tgtttgctaacctcctgaatgtttatggaaaatccaatacagtccttctcatgaatgcctgtaatt |
336 |
Q |
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| T |
6940203 |
tgtttgctaacctcccggacgtttatggaaaatccaata----ccttttcatgaatgcctgtaatt |
6940142 |
T |
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