View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17964_low_1 (Length: 858)

Name: NF17964_low_1
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17964_low_1
NF17964_low_1
[»] chr2 (12 HSPs)
chr2 (110-842)||(44623720-44624451)
chr2 (514-811)||(44614563-44614857)
chr2 (366-450)||(44614861-44614943)
chr2 (448-556)||(39370109-39370217)
chr2 (448-535)||(39459274-39459361)
chr2 (448-551)||(39468345-39468448)
chr2 (453-551)||(39152581-39152679)
chr2 (661-767)||(39473637-39473743)
chr2 (448-551)||(39397783-39397886)
chr2 (685-832)||(39458917-39459064)
chr2 (649-734)||(39389332-39389417)
chr2 (702-735)||(39390708-39390741)
[»] chr8 (5 HSPs)
chr8 (702-842)||(40347367-40347507)
chr8 (411-551)||(45342056-45342196)
chr8 (111-193)||(44950907-44950985)
chr8 (366-411)||(45342226-45342271)
chr8 (308-353)||(45342290-45342335)
[»] chr6 (1 HSPs)
chr6 (454-551)||(16113305-16113402)
[»] chr5 (1 HSPs)
chr5 (411-479)||(17059551-17059622)
[»] scaffold0250 (1 HSPs)
scaffold0250 (562-611)||(4326-4375)
[»] chr3 (1 HSPs)
chr3 (642-695)||(51574601-51574654)


Alignment Details
Target: chr2 (Bit Score: 595; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 110 - 842
Target Start/End: Complemental strand, 44624451 - 44623720
Alignment:
Q  110 tgtacattaatatactaatctatcattagcaataccatattagttttaggtttaaccctttagttatggataaaaatacaagagnnnnnnncacttaaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  44624451 tgtacattaatatactaatctatcattagcaataccatattagttttaggtttaaccctttagttatggataaaaatacaagagtttttttcacttaaga 44624352  T
Q  210 gattctaaaaatgttcaagtgtgaaaagtataatccaaattaatttgacannnnnnnnnnnnnnnnnnnnnnncgcgcgcgtttgatatggaaattgtac 309  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||                       |||||||||||||||||||||||||||    
T  44624351 gattctaaaaatgttcaagggtgaaaagtataatccaaattaatttgacagtgtgtgtatgagtgtgtgtgcgcgcgcgcgtttgatatggaaattgtac 44624252  T
Q  310 aagcttttcaacttgactaggatatgctgcattaacatcattaacnnnnnnnnnctaatatatagatctggttattaaaaatatcaacatcaataaaaga 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  44624251 aagcttttcaacttgactaggatatgctgcattaacatcattaacaaaaaaaa-ctaatatatagatctggttattaaaaatatcaacatcaataaaaga 44624153  T
Q  410 aagatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttga 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624152 aagatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttga 44624053  T
Q  510 cttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatt 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624052 cttaagatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcatt 44623953  T
Q  610 tttacttcgaatttctcttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaatt 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  44623952 tttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaactttaaattcctcttcttttgattggaactccatcactcttatttcgaatt 44623853  T
Q  710 ccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattc 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44623852 ccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattc 44623753  T
Q  810 aaactcatttacttgaccatcaagtatattctt 842  Q
    |||||||||||||||||||||||||||||||||    
T  44623752 aaactcatttacttgaccatcaagtatattctt 44623720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 514 - 811
Target Start/End: Complemental strand, 44614857 - 44614563
Alignment:
Q  514 agatccttgatttgtacttcaatctgattctcttttaattcgagtgctttgacagatttgagattgtcctcaacttgattttcaaattgctgcattttta 613  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||     
T  44614857 agatccttgatttgtacttcaatctgattctcttttaactcgagtgctttgacagatttgagattgtcctcagtttggttttcaatttgctgcatttttc 44614758  T
Q  614 cttcgaatttctcttcctttgcttcaaaaagtactttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattcctt 713  Q
    |||| |||| |||| |||||| |||||| | |   |||||| |  ||||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||    
T  44614757 cttcaaattcctctacctttgtttcaaacatt---ttcactcgacctttaaattcctcctcttctgactggaactccttcactcttctttcaaattcctt 44614661  T
Q  714 ttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcaccctttttagattcaa 811  Q
    ||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||||||||  ||  |||||||| ||||||||||||| ||| ||||    
T  44614660 ttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtcctccaccaggccttcaaattcacccttttcagactcaa 44614563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 366 - 450
Target Start/End: Complemental strand, 44614943 - 44614861
Alignment:
Q  366 aatatatagatctggttattaaaaatatcaacatcaataaaagaaagatgaatagcaacatttaccaaattctttttcttcatca 450  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||    
T  44614943 aatatgtagatcaggttattaaaaatatcaacatcaataaaata--gatgaatagcaacatttaccaaattctttttcctcatca 44614861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 448 - 556
Target Start/End: Complemental strand, 39370217 - 39370109
Alignment:
Q  448 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt 547  Q
    |||| |||||||| |||| ||||| ||| |||| |||||||| | || ||||||| |||||||| |||| |||||| ||||  | ||| ||| |||||||    
T  39370217 tcatattgtttctttgtcgactcaggcttctttagttgtccatccaatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctctt 39370118  T
Q  548 ttaattcga 556  Q
    |||||||||    
T  39370117 ttaattcga 39370109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 448 - 535
Target Start/End: Complemental strand, 39459361 - 39459274
Alignment:
Q  448 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaa 535  Q
    |||| ||||||| ||||||||||| |||||||   ||||||| |||||||||| ||||||||||   ||||||||| |||| ||||||    
T  39459361 tcatattgtttcactgtcaactcaggctccttcacttgtccatcaaaattattaagctttgactctggatccttgacttgtccttcaa 39459274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 448 - 551
Target Start/End: Complemental strand, 39468448 - 39468345
Alignment:
Q  448 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt 547  Q
    |||| ||||||| || |||||||| ||||||| | ||||||  |||| ||| ||  |||||||| ||| ||||||| |||| |||||||||| |||||||    
T  39468448 tcatattgtttccctttcaactcaggctccttcgcttgtccgtcaaacttaatcgactttgactgaagttccttgacttgtccttcaatctgcttctctt 39468349  T
Q  548 ttaa 551  Q
    ||||    
T  39468348 ttaa 39468345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 453 - 551
Target Start/End: Complemental strand, 39152679 - 39152581
Alignment:
Q  453 ttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 551  Q
    ||||||||||||||| ||| ||||||| |  |||||| ||   ||||| |||||||||| ||||||||||  || |||||||| ||| |||||||||||    
T  39152679 ttgtttctctgtcaaatcatgctccttcgactgtccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaa 39152581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 767
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
Q  661 ttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgtttttt 760  Q
    ||||||||||| |||||||| ||||||||| |||||  ||  | ||||| ||||||||||||||| | ||||||  || | |||||||||| | | ||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 39473736  T
Q  761 ctgattc 767  Q
    |||||||    
T  39473737 ctgattc 39473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 551
Target Start/End: Original strand, 39397783 - 39397886
Alignment:
Q  448 tcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctctt 547  Q
    |||| ||||||| ||||||||||| |||||||  |||||||| |||| |||| |||| |||||| ||| ||||||| | |  || ||| ||| |||||||    
T  39397783 tcatattgtttccctgtcaactcaggctccttcagttgtccatcaaatttatccagccttgactcaagttccttgactcgacctgcaacctgcttctctt 39397882  T
Q  548 ttaa 551  Q
    ||||    
T  39397883 ttaa 39397886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 832
Target Start/End: Complemental strand, 39459064 - 39458917
Alignment:
Q  685 aactccatcactcttctttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggc 784  Q
    |||||| |||||  || |||||||| ||||||||||||||| | ||||||  | |  |||||||||| | | ||||||||||| || ||| |||   |||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  785 cttccaattcaccctttttagattcaaactcatttacttgaccatcaa 832  Q
    |||| |||||| ||| ||| ||||||| ||| ||| || |||||||||    
T  39458964 cttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaa 39458917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 734
Target Start/End: Original strand, 39389332 - 39389417
Alignment:
Q  649 ttcacttggactttaaattcctcttcttttgattggaactccatcactcttctttcaaattccttttcttttgattcaaactcctt 734  Q
    ||||||||  ||| ||||||||| ||||||||||| |||||| ||||| ||| ||| |||| ||  |||||||| |||| ||||||    
T  39389332 ttcacttgttcttcaaattcctcctcttttgattgaaactccttcacttttccttcgaatttctcctcttttgactcaagctcctt 39389417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 735
Target Start/End: Original strand, 39390708 - 39390741
Alignment:
Q  702 ttcaaattccttttcttttgattcaaactccttt 735  Q
    |||||||||||| |||||||||||||||||||||    
T  39390708 ttcaaattccttctcttttgattcaaactccttt 39390741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 3e-47; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 702 - 842
Target Start/End: Complemental strand, 40347507 - 40347367
Alignment:
Q  702 ttcaaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaagtccctcaataggccttccaattcacccttt 801  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||  || | ||| ||||||||||||    
T  40347507 ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt 40347408  T
Q  802 ttagattcaaactcatttacttgaccatcaagtatattctt 842  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  40347407 ttagattcaaactcatttactcgaccatcaagtatattctt 40347367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 411 - 551
Target Start/End: Complemental strand, 45342196 - 45342056
Alignment:
Q  411 agatgaatagcaacatttaccaaattctttttcttcatcatgttgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgac 510  Q
    ||||||||| |||  |||||||||||||||||| ||||| | |||||||| |||||||||||||||||||  ||||||| | ||||||||||||||||||    
T  45342196 agatgaataacaaattttaccaaattctttttcctcatcgtattgtttctttgtcaactcaagctcctttatttgtccatccaaattattcagctttgac 45342097  T
Q  511 ttaagatccttgatttgtacttcaatctgattctcttttaa 551  Q
    | ||| ||||||||||| ||||||| |||||||||||||||    
T  45342096 tcaaggtccttgatttgcacttcaaactgattctcttttaa 45342056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 44950907 - 44950985
Alignment:
Q  111 gtacattaatatactaatctatcattagcaataccatattagttttaggtttaaccctttagttatggataaaaatacaagag 193  Q
    ||||||||||||||||||||||||||| || ||||||||   ||||||| |||| || ||||| |||||||||||| ||||||    
T  44950907 gtacattaatatactaatctatcattaccagtaccatat---ttttaggattaaacc-ttagtaatggataaaaatgcaagag 44950985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 45342271 - 45342226
Alignment:
Q  366 aatatatagatctggttattaaaaatatcaacatcaataaaagaaa 411  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||||    
T  45342271 aatatgtagatcaggttattaaaaatatcaacatcaacaaaagaaa 45342226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 45342335 - 45342290
Alignment:
Q  308 acaagcttttcaacttgactaggatatgctgcattaacatcattaa 353  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||    
T  45342335 acaagcttttcaacttgactaagatatactacattaacatcattaa 45342290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 454 - 551
Target Start/End: Complemental strand, 16113402 - 16113305
Alignment:
Q  454 tgtttctctgtcaactcaagctcctttggttgtccaccaaaattattcagctttgacttaagatccttgatttgtacttcaatctgattctcttttaa 551  Q
    |||||| |||| |||||| |||||||  ||||||| ||||| |  ||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  16113402 tgtttccctgttaactcaggctccttcagttgtccgccaaattcgttcagctttgactcaagctccttgacttgtacttcaatctgcttctcttttaa 16113305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 479
Target Start/End: Complemental strand, 17059622 - 17059551
Alignment:
Q  411 agatgaatagcaacatttaccaaattctttttc---ttcatcatgttgtttctctgtcaactcaagctcctt 479  Q
    ||||||||| ||||||||||||||||| |||||   ||||||||||||||||| ||||||||||| ||||||    
T  17059622 agatgaataacaacatttaccaaattcattttccccttcatcatgttgtttctttgtcaactcaaactcctt 17059551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 611
Target Start/End: Complemental strand, 4375 - 4326
Alignment:
Q  562 ttgacagatttgagattgtcctcaacttgattttcaaattgctgcatttt 611  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| ||||    
T  4375 ttgacaaatttgagattgtcctcaacttggctttcaaattgctgcttttt 4326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 695
Target Start/End: Complemental strand, 51574654 - 51574601
Alignment:
Q  642 aagtactttcacttggactttaaattcctcttcttttgattggaactccatcac 695  Q
    |||||| ||||||||||||||||| ||||| ||||||||||  |||||| ||||    
T  51574654 aagtaccttcacttggactttaaagtcctcctcttttgattcaaactccttcac 51574601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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