View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17964_low_10 (Length: 465)

Name: NF17964_low_10
Description: NF17964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17964_low_10
NF17964_low_10
[»] chr1 (4 HSPs)
chr1 (44-465)||(33330403-33330828)
chr1 (63-135)||(48680609-48680681)
chr1 (54-99)||(17874734-17874779)
chr1 (58-98)||(572334-572374)
[»] chr4 (1 HSPs)
chr4 (47-142)||(43874872-43874967)
[»] chr3 (4 HSPs)
chr3 (77-136)||(20610001-20610060)
chr3 (60-142)||(34153797-34153879)
chr3 (62-142)||(2983639-2983718)
chr3 (60-116)||(22934979-22935035)
[»] chr6 (1 HSPs)
chr6 (44-136)||(4231741-4231833)
[»] chr5 (1 HSPs)
chr5 (58-109)||(19519120-19519171)
[»] chr7 (2 HSPs)
chr7 (77-130)||(14088691-14088744)
chr7 (77-130)||(14398709-14398762)


Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 44 - 465
Target Start/End: Complemental strand, 33330828 - 33330403
Alignment:
Q  44 aagtggattgatgggttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactgg 143  Q
    ||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||    
T  33330828 aagtggattgatatattattgggttgggtctagtataaagaaagtatcgattgagctcgggcgagtacccggggtcgtcgggtggtgtctccgctactgg 33330729  T
Q  144 tgctaaccctccacttatttccacactggtttggattcc---atgtcgaaatatcttgttaacatattgaaagtcattggatcaaatagtccaaattttt 240  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33330728 tgctaaccctccacttatttccacactggtttggattccttgatgtcgaaatatcttgttaacatattgaaagtcattggatcaaatagtccaaattttt 33330629  T
Q  241 gatattttggatattataaataatcaaaatatgcgtgatttctcaaccgttcgatcttgattcaacaattaccaatgtgttgaatgcgtaagtgcaagat 340  Q
    | |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33330628 ggtattttggatattataaataatcaaaatctacgtgatttctcaaccgttcgatcttgattcaacaattaccaatgtgttgaatgcgtaaatgcaagat 33330529  T
Q  341 atcaggattgaaaggaatccatttttatttccacaccctcgt-nnnnnnnngaagaaaagatcttatcatggttcacttgaaataaaaagaatagggtaa 439  Q
    ||| | |||||||||||||||||||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33330528 atctgaattgaaaggaatccatttttatttccacaccctcataaaaaaaaagaagaaaagatcttatcatggttcacttgaaataaaaagaatagggtaa 33330429  T
Q  440 agtattctattctatggaacatatat 465  Q
    ||||||||||||||||||||||||||    
T  33330428 agtattctattctatggaacatatat 33330403  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 48680609 - 48680681
Alignment:
Q  63 tgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctcc 135  Q
    |||||||||  ||||||||||||||||| ||||||| ||||||||||| ||| | ||| | ||||||||||||    
T  48680609 tgggttgggcttagtataaagaaagtatcgattgagttcgggcgagtatccgaggtcgccaggtggtgtctcc 48680681  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 17874779 - 17874734
Alignment:
Q  54 atgggttattgggttgggtctagtataaagaaagtattgattgagc 99  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  17874779 atgggctattgggttggacctagtataaagaaagtattgattgagc 17874734  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 572334 - 572374
Alignment:
Q  58 gttattgggttgggtctagtataaagaaagtattgattgag 98  Q
    |||||||||||||  |||||||||||||||||| |||||||    
T  572334 gttattgggttggacctagtataaagaaagtatcgattgag 572374  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 43874872 - 43874967
Alignment:
Q  47 tggattgatgggttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactg 142  Q
    |||||| ||| | |||||||||||  |||| ||||||||| |||  |||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  43874872 tggattaatgagctattgggttggacctagaataaagaaaatatcaattgagctcgggcgagtacccggggtcgccggatggtgtctccgtcactg 43874967  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 20610060 - 20610001
Alignment:
Q  77 tataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccg 136  Q
    |||||||||||||| |||| ||||||||||||| |||||| ||||||||||||| |||||    
T  20610060 tataaagaaagtatcgattaagctcgggcgagtgcccggggtcgtcgggtggtggctccg 20610001  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 34153797 - 34153879
Alignment:
Q  60 tattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactg 142  Q
    |||||||||||| ||||| |||||||| ||| |||||||| ||| ||||| ||||||  ||||| |||||||||||| |||||    
T  34153797 tattgggttgggcctagtgtaaagaaaatatcgattgagcccggacgagtgcccggggccgtcgagtggtgtctccgccactg 34153879  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 2983639 - 2983718
Alignment:
Q  62 ttgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccgtcactg 142  Q
    |||||||||| |||||||||||||| ||| |||||||| ||||| |   |||||| ||| ||||||||||||| |||||||    
T  2983639 ttgggttggg-ctagtataaagaaaatatcgattgagcccgggcaaaatcccggggtcgccgggtggtgtctctgtcactg 2983718  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 22934979 - 22935035
Alignment:
Q  60 tattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccggg 116  Q
    |||| ||||||  |||||||||||||||||| |||||||| ||| ||||| ||||||    
T  22934979 tattaggttggacctagtataaagaaagtatcgattgagcccggacgagtgcccggg 22935035  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 4231741 - 4231833
Alignment:
Q  44 aagtggattgatgggttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtgtctccg 136  Q
    ||||||||| ||||  |||| ||||||| | | |||||||||||||| ||||||| |||||||||| || | | ||| ||||||||| |||||    
T  4231741 aagtggattaatggactatttggttgggccaaatataaagaaagtatcgattgagttcgggcgagtgccggaggtcgccgggtggtggctccg 4231833  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 19519120 - 19519171
Alignment:
Q  58 gttattgggttgggtctagtataaagaaagtattgattgagctcgggcgagt 109  Q
    |||||||||||||  |||||||||||||||||| |||||||| ||| |||||    
T  19519120 gttattgggttggacctagtataaagaaagtatcgattgagcccggacgagt 19519171  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 14088744 - 14088691
Alignment:
Q  77 tataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtg 130  Q
    |||||||||||||| |||||||| ||||| ||| |||||| ||| |||||||||    
T  14088744 tataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 14088691  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 14398762 - 14398709
Alignment:
Q  77 tataaagaaagtattgattgagctcgggcgagtacccgggatcgtcgggtggtg 130  Q
    |||||||||||||| |||||||| ||||| ||| |||||| ||| |||||||||    
T  14398762 tataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 14398709  T

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